RefSeq NC_012850.1
Accession number NC_012850.1
DoriC accession number ORI93040198
OriC length 425 nt
OriC AT content 0.510588
The location of oriC region 4365704..4366128 nt
Browse in NCBI
OriC map
OriC sequences
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemeGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
hemEGATCTTTCGGCGCGTATCGCTCAAGCGCTTCTTCCCTATAATAAAACAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGACTATCAAGGATTAAAATCCATCCACCGCCGATGCCATTTGTCGCGCGCCCGCAAAACAACATCGGAAAGATTTGTCGATCTCGTCCAAATTTCGGGGAGAAGCCGAATCCGGAAATGATTCCAAATCCTTCCGGATCGGCAATTTTTCTCATAGCTGTGGACAGGCTGTGGACGAGCTTTCAAGAAGCCCACCCCTTCCCCATCGTCCACAGGGCCAACCGAAACCGTTCGGCAAAATCCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCGGAGACTGCCTCGCCGCCGTAGCTCTGTTTCATCCAGTGTTTTCAACAGGCAGCGGAAAATAGC-
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TGTGGAYRRGC

StartP-valueSite
2544.95e-07GTGGACAGGCTGTGGACGAGCTTTCAAGAAG
2434.95e-07TTCTCATAGCTGTGGACAGGCTGTGGACGAG
3326.66e-07AAATCCGAAATGTGGATAAGCAGGCATGTTT

Motif CGGMAA

StartP-valueSite
4152.30e-04CAACAGGCAGCGGAAAATAGC
1972.30e-04AAGCCGAATCCGGAAATGATTCCAAA
1502.30e-04AAAACAACATCGGAAAGATTTGTCGA
3174.68e-04CGAAACCGTTCGGCAAAATCCGAAAT
2244.68e-04CCTTCCGGATCGGCAATTTTTCTCAT

Motif ATTTGTCG

StartP-valueSite
1571.30e-05CATCGGAAAGATTTGTCGATCTCGTCCA
1231.30e-05CGCCGATGCCATTTGTCGCGCGCCCGCA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI93040198 100.0 425 0 0 1 425 1 425 0.0 785
ORI40030119 92.75 400 29 0 26 425 2 401 0.0 579
ORI92740160 87.793 426 49 3 1 425 1 424 0.0 496
ORI92540152 84.346 428 61 6 1 425 49 473 0.0 414
ORI10040059 82.051 429 64 13 1 423 49 470 0.0 353
ORI95030437 90.278 72 6 1 39 110 17 87 3.95e-20 94
ORI92730253 94.545 55 3 0 56 110 32 86 6.6e-18 86
ORI96000428 92.727 55 4 0 56 110 34 88 3.07e-16 81