DoriC

RefSeq

NC_007761.1

Accession number

NC_007761.1

DoriC accession number

ORI10040059

OriC length

472 nt

OriC AT content

0.5

The location of oriC region

1..472 nt

Browse in NCBI

OriC map

OriC sequences

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemeCAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

hemECAGCCAGACAGGCGGAGGGAAAACGCTTTCGCCGTCGAGAACCCTCATGACCTTTCGCCGCGTATCGCTCAAGCGCGTCTTCCCTATAAAAAATCAAAGATATTTTAAAAGGTTTCTATTTCTTAGAGTCGGTGTCTATCAAGGATTAAAATCCATCCACTGCCGATGCCATTTGTCGCGCGTTCGAAGAGGAACTCGAAAGAATTTCTCCTTTCCTGTCGAATTCCGAGGAGAATCCGAATCGAAAAGCGATTCCAAGTCCTTACCAGGAGCCGAATTTTTTCGTCCCTGTGGATAGGCTGTGGGCCGCTCGACGACAAGTCGATGTCATCCCCAGCTTCCACAGGAGCGGTTGAAACCGGTCCGCAAAATTCGAAATGTGGATAAGCAGGCATGTTTTCCCTTGCCCGAGGCAGCCTCGCCGCCTTAGCTCTCCATCATCCAGTCTTTTCAACAGGTGGCGGAAAATAAC-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif ABAGGCGGHGG

Start	P-value		Site
8	6.64e-07	CAGCCAG	ACAGGCGGAGG	GAAAACGCTT
295	3.67e-06	GTCCCTGTGG	ATAGGCTGTGG	GCCGCTCGAC
454	3.84e-06	AGTCTTTTCA	ACAGGTGGCGG	AAAATAAC
125	1.13e-05	TCTATTTCTT	AGAGTCGGTGT	CTATCAAGGA

Motif TTTYYYCKTBCCYGWSG

Start	P-value		Site
278	1.71e-09	AGGAGCCGAA	TTTTTTCGTCCCTGTGG	ATAGGCTGTG
205	4.29e-09	CTCGAAAGAA	TTTCTCCTTTCCTGTCG	AATTCCGAGG
397	9.90e-09	AGCAGGCATG	TTTTCCCTTGCCCGAGG	CAGCCTCGCC

Motif AGGAGCSG

Start	P-value		Site
345	1.14e-05	CAGCTTCCAC	AGGAGCGG	TTGAAACCGG
268	2.47e-05	AGTCCTTACC	AGGAGCCG	AATTTTTTCG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI10040059	100.0	472	0	0	1	472	1	472	0.0	872
ORI92540152	84.969	479	55	16	1	470	1	471	0.0	470
ORI92740160	83.178	428	60	11	49	470	1	422	0.0	381
ORI93040198	82.051	429	64	13	49	470	1	423	0.0	353
ORI40030119	79.455	404	70	13	74	470	2	399	0.0	274
ORI95030437	90.278	72	6	1	87	158	17	87	4.4e-20	94
ORI92730253	89.855	69	7	0	90	158	18	86	5.7e-19	90
ORI96000428	87.5	72	5	4	89	158	19	88	3.43e-16	81