ORI97301432 | DoriC 14.0: an updated database of prokaryotic replication origins with significantly expanded plasmid oriV annotations

Basic Information

Assembly acc	`GCF_963556575.1`
Acc	`NZ_OY750577.1`
OriID	ORI97301432
Organism	Corynebacterium diphtheriae
Topology	Linear
Lineage	Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Corynebacteriaceae ; Corynebacterium ; Corynebacterium diphtheriae
Assembly Level	Complete
Literature linkage	Not linked
Chromosome size	2484293 nt
Chromosome GC content	53.54%
Indicator genes	dnaA 1... 1659nt dnaN 2298... 3485nt hemE 2107074... 2108111nt hemB 2112275... 2113267nt rpmH 2483207... 2483350nt
OriC location	2483350 ... 2484293 nt
OriC Length	943 nt
OriC AT Content	0.54

Comparative Sequence Support

Recurrence category Cross-taxon

Sequence cluster BC-OH000119

Cluster members 77

Distinct accessions 67

Species / genera 3 / 1

Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank	Ori ID	Accession	Organism	Identity	Reciprocal coverage	Literature linkage
1	`ORI97301431`	`NZ_OY750578.1`	Corynebacterium diphtheriae	99.80%	100.00%	Not linked
2	`ORI10010026`	`NC_002935.2`	Corynebacterium diphtheriae NCTC 13129	99.70%	100.00%	Not linked
3	`ORI95010982`	`NC_016790.1`	Corynebacterium diphtheriae VA01	99.40%	100.00%	Not linked
4	`ORI95010988`	`NC_016800.1`	Corynebacterium diphtheriae BH8	99.40%	100.00%	Not linked
5	`ORI95010980`	`NC_016789.1`	Corynebacterium diphtheriae PW8	98.30%	100.00%	Not linked
6	`ORI97018291`	`NZ_CP039522.1`	Corynebacterium diphtheriae	98.30%	100.00%	Not linked
7	`ORI97018292`	`NZ_CP039523.1`	Corynebacterium diphtheriae	98.30%	100.00%	Not linked
8	`ORI97029779`	`NZ_CP040519.1`	Corynebacterium diphtheriae	99.80%	98.10%	Not linked
9	`ORI97285444`	`NZ_CP196056.1`	Corynebacterium diphtheriae	99.80%	98.10%	Not linked
10	`ORI97028680`	`NZ_CP040520.1`	Corynebacterium diphtheriae	99.70%	98.10%	Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Replication Initiation Protein Information

Gene Start	Gene End	Translation
1	1659	VWNETWNEITNELIQLSREP...

OriC Visualization

OriC map

OriC sequences

rpmHGGTGAACACTCCTCTAAATTGTTACAAGGTGATATCGCTGCCGGTGACCGGCTGCGGTATCACCCTTGAATTGGATGATTATCAAAACATAGAGAGTCACACGCCGCGCTAGTCACAGTCTCACTAGCGGTGAAAGTCTTGACCTCAACAGGGTCACACCGATGAACACGATGTGCATGCTGAGTCCCTTCGTTCCTGGCGGCACTCTCGTTAAAGCACTTGCGATTGACGTATATGGTACGCCCGTTGCAGTGACAGACAACGAATAGAGTACGTGAGCTTGCCCCACTTCAACAAATCGACACGCCAATGAGTCACACTTACCCCTGTAATCGCAAATATGTAATTTCACCTTTGGTTTTCCAAGCGTTGGCCGGTCATCGACAATGAAATGACAAAAATCAACGTTTTCTACCGTCAGTAATCCAGCCGCAATCACCCCCGCACCCCACGTAGCGCTTTTCACAAGTTGGACACCGAAAAAGACAACCGAGTAACACTACTTGTGAGAAAAAATCACATACTGTGAAAAACCGTACCTGTGGATAACTTTTTTATTTTTCCACCGAGTTTTCCACAAAAATTACATTCCCGCAGGTAGAACCATACTTTTTGGGAATGAAATTTTATCCACAGTGTGAAAAATAAAATGTTGATAACTTTTCACAGTGAGTCAACGTGGATTTTTTCCACAGCTGTGGAAAACTCTGTGGAATACGCGGTCAAAGCCGCAAACCAGTTGTGGAAAGTTCAGTGGAGTTCCGGTGGACGTCTTGTGGAAATTACAAAAATTTATCCACCGCGGATTTTCACTCCACATCCCCGCGCTACGCGGAGATTGTTCTGCGAATGCAATCTCTTCGTAGCTGCCACAACTGGCGCACATCGTCGTCAATCATTCGCTTGACCTTATAAAGGAAGTACAGTGTCGGAAACGCCATCC-

rpmhGGTGAACACTCCTCTAAATTGTTACAAGGTGATATCGCTGCCGGTGACCGGCTGCGGTATCACCCTTGAATTGGATGATTATCAAAACATAGAGAGTCACACGCCGCGCTAGTCACAGTCTCACTAGCGGTGAAAGTCTTGACCTCAACAGGGTCACACCGATGAACACGATGTGCATGCTGAGTCCCTTCGTTCCTGGCGGCACTCTCGTTAAAGCACTTGCGATTGACGTATATGGTACGCCCGTTGCAGTGACAGACAACGAATAGAGTACGTGAGCTTGCCCCACTTCAACAAATCGACACGCCAATGAGTCACACTTACCCCTGTAATCGCAAATATGTAATTTCACCTTTGGTTTTCCAAGCGTTGGCCGGTCATCGACAATGAAATGACAAAAATCAACGTTTTCTACCGTCAGTAATCCAGCCGCAATCACCCCCGCACCCCACGTAGCGCTTTTCACAAGTTGGACACCGAAAAAGACAACCGAGTAACACTACTTGTGAGAAAAAATCACATACTGTGAAAAACCGTACCTGTGGATAACTTTTTTATTTTTCCACCGAGTTTTCCACAAAAATTACATTCCCGCAGGTAGAACCATACTTTTTGGGAATGAAATTTTATCCACAGTGTGAAAAATAAAATGTTGATAACTTTTCACAGTGAGTCAACGTGGATTTTTTCCACAGCTGTGGAAAACTCTGTGGAATACGCGGTCAAAGCCGCAAACCAGTTGTGGAAAGTTCAGTGGAGTTCCGGTGGACGTCTTGTGGAAATTACAAAAATTTATCCACCGCGGATTTTCACTCCACATCCCCGCGCTACGCGGAGATTGTTCTGCGAATGCAATCTCTTCGTAGCTGCCACAACTGGCGCACATCGTCGTCAATCATTCGCTTGACCTTATAAAGGAAGTACAGTGTCGGAAACGCCATCC-

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

BLAST Results

Subject ID	Identity (%)	Length	Mismatches	Gaps	Query Start	Query End	Subject Start	Subject End	Bit Score
ORI10010026	99.79%	943	1	1	1	943	1	942	1729.0
ORI95010988	99.47%	943	5	0	1	943	1	943	1714.0
ORI95010982	99.47%	943	3	1	1	943	1	941	1712.0
ORI95010992	99.68%	926	2	1	1	925	1	926	1692.0
ORI95010986	99.05%	944	8	1	1	943	1	944	1692.0
ORI95010966	99.57%	925	3	1	1	925	1	924	1685.0
ORI95010974	99.46%	925	3	1	1	925	1	923	1679.0
ORI95010980	98.30%	943	16	0	1	943	1	943	1653.0
ORI95010976	97.67%	943	22	0	1	943	1	943	1620.0
ORI95010968	97.95%	925	18	1	1	925	1	924	1602.0
ORI95010972	97.62%	925	21	1	1	925	1	924	1585.0
ORI95010978	97.41%	925	24	0	1	925	1	925	1576.0
ORI95010990	97.30%	925	24	1	1	925	1	924	1568.0
ORI96010251	74.91%	263	51	13	489	744	531	785	106.0
ORI96010064	74.91%	263	51	13	489	744	531	785	106.0
ORI94010882	74.91%	263	51	13	489	744	531	785	106.0
ORI96010220	74.09%	247	44	15	489	725	529	765	84.2
ORI96010193	74.09%	247	44	15	489	725	528	764	84.2
ORI96010057	74.09%	247	44	15	489	725	529	765	84.2
ORI96010234	73.68%	247	45	14	489	725	529	765	78.7
ORI96010059	73.68%	247	44	16	489	725	529	764	76.8
ORI96010099	73.28%	247	45	15	489	725	529	764	71.3
ORI96010056	73.28%	247	45	15	489	725	529	764	71.3
ORI96010054	73.28%	247	45	15	489	725	529	764	71.3
ORI96010052	73.28%	247	45	15	489	725	529	764	71.3
ORI96010051	73.28%	247	45	15	489	725	529	764	71.3
ORI95011033	73.28%	247	45	15	489	725	529	764	71.3
ORI96010050	72.87%	247	46	15	489	725	529	764	65.8
ORI94010711	72.87%	247	46	15	489	725	529	764	65.8

Found 29 BLAST matches

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