Basic Information

Assembly acc GCF_040960825.1
Acc NZ_CP162651.1
OriID ORI97274061
Organism Mycobacterium intracellulare
Topology Circular
Lineage Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium intracellulare
Assembly Level Complete
Literature linkage Not linked
Chromosome size 5257760 nt
Chromosome GC content 68.22%
Indicator genes
  • dnaA      5256247... 22nt
  • dnaN      558... 1757nt
  • hemE      3506900... 3507973nt
  • hemB      4612340... 4613329nt
  • rpmH      5255501... 5255644nt
OriC location
  • 22 ... 557 nt
OriC Length
  • 535 nt
OriC AT Content
  • 0.39

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000082
Cluster members 132
Distinct accessions 132
Species / genera 7 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97207418 NZ_AP022597.1 Mycobacterium paraintracellulare 100.00% 100.00% Not linked
2 ORI97226926 NC_016948.1 Mycobacterium paraintracellulare 100.00% 100.00% Not linked
3 ORI97207480 NZ_AP024241.1 Mycobacterium intracellulare 99.80% 100.00% Not linked
4 ORI97207482 NZ_AP024243.1 Mycobacterium paraintracellulare 99.80% 100.00% Not linked
5 ORI97207484 NZ_AP024244.1 Mycobacterium intracellulare 99.80% 100.00% Not linked
6 ORI97207496 NZ_AP024253.1 Mycobacterium paraintracellulare 99.80% 100.00% Not linked
7 ORI97207498 NZ_AP024254.1 Mycobacterium intracellulare 99.80% 100.00% Not linked
8 ORI97207514 NZ_AP024265.1 Mycobacterium intracellulare M.i.198 99.80% 100.00% Not linked
9 ORI97209905 NZ_CP089222.1 Mycobacterium intracellulare subsp. intracellulare 99.80% 100.00% Not linked
10 ORI97226924 NC_016946.1 Mycobacterium intracellulare ATCC 13950 99.80% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP162651.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
1 5257760 MTDDPGSGFTTVWNAVVSEL...

OriC Visualization

OriC map
OriC sequences
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaaATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnan
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
dnaAATCCCCGGTTTTCGGCGCCCCTGCGCGCAAATTTTTCGAGAAACTTCTCGCGCGTCCGTCACATCCGCAACACCCAGGGCATGTGCGCAGCCCTGTGCACACAGCATCCAAACTGCGGTGCAGTACCGGGCGTTCCGTGCACACTTGTCGTTCGTCCCCACCGGACCAACACCTGACTCACAGGCGCCACCGCGACGATCCACATCCCGATCGTCGCGCTAGCTGGGCCGGGGCGACGCTGTCCCCAGAATGCACAGGCCTTAATACTGTTACTGAGATCTCTACATCGGTTCTTCTTGGAAATACAGGCCTGGGGACGTTCGGTGCACACCCCTCGCCGAGTCCGTCGTCAGATCGTTTTGTCGGCCTTCGCGATTAGCTTTCAAGATGGCCCCGGAGGATCTACGGTTGTTCTTCGACTGCCGTTACGGTCGTCGTCGGCGCGTTGCGTCGCCGGCGCTCGTGGCGGAGCCCCGTGCTAGCGGGGGGAGGCTAGCCACAATGGATTCGAAAACGCTGAAGGTGAAGGGACGCTdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI60040082 82.92% 527 72 15 19 535 51 569 0.0 459.0
ORI10040011 82.69% 520 72 15 26 535 58 569 0.0 446.0
Found 2 BLAST matches
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