Basic Information

Assembly acc GCF_000967365.1
Acc NC_020532.1
OriID ORI97227900
Organism Staphylococcus aureus subsp. aureus ST228
Topology Circular
Lineage Bacteria ; Bacillati ; Bacillota ; Bacilli ; Caryophanales ; Staphylococcaceae ; Staphylococcus ; Staphylococcus aureus
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2759883 nt
Chromosome GC content 32.85%
Indicator genes
  • dnaA      517... 1878nt
  • dnaN      2156... 3289nt
  • hemB      1679054... 1680028nt
  • hemE      1864969... 1866006nt
  • gidA      2755578... 2757455nt
  • rpmH      2759532... 2759669nt
OriC location
  • 1879 ... 2155 nt
OriC Length
  • 277 nt
OriC AT Content
  • 0.704

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000008
Cluster members 912
Distinct accessions 912
Species / genera 3 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI10010016 NC_002745.2 Staphylococcus aureus subsp. aureus N315 100.00% 100.00% Not linked
2 ORI10010018 NC_002758.2 Staphylococcus aureus subsp. aureus Mu50 100.00% 100.00% Not linked
3 ORI90010304 NC_009487.1 Staphylococcus aureus subsp. aureus JH9 100.00% 100.00% Not linked
4 ORI92210346 NC_009782.1 Staphylococcus aureus subsp. aureus Mu3 100.00% 100.00% Not linked
5 ORI93010599 NC_013450.1 Staphylococcus aureus subsp. aureus ED98 100.00% 100.00% Not linked
6 ORI96010073 NC_017340.1 Staphylococcus aureus 04-02981 100.00% 100.00% Not linked
7 ORI96010079 NC_017343.1 Staphylococcus aureus subsp. aureus ECT-R 2 100.00% 100.00% Not linked
8 ORI97014207 NZ_LT009690.1 Staphylococcus aureus 100.00% 100.00% Not linked
9 ORI97033912 NZ_LR130511.1 Staphylococcus aureus 100.00% 100.00% Not linked
10 ORI97227899 NC_020529.1 Staphylococcus aureus subsp. aureus ST228 100.00% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_020532.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
517 1878 MSEKEIWEKVLEIAQEKLSA...

OriC Visualization

OriC map
OriC sequences
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaaGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnan
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATAATAACTGTCATTTTTTACATTTCTATATACTAATGTGACAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTACGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI96010079 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI96010073 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI93010599 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI92210346 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI92010318 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI90010304 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI10010018 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI10010016 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI96010085 99.64% 277 1 0 1 277 1 277 0.0 507.0
ORI96010197 98.92% 277 3 0 1 277 1 277 0.0 496.0
ORI96010071 98.20% 277 5 0 1 277 1 277 0.0 484.0
ORI95011012 98.20% 277 5 0 1 277 1 277 0.0 484.0
ORI95011010 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI92210359 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI10010183 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI10010181 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI10010176 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI10010065 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI10010034 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI10010030 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI96010083 97.49% 279 5 2 1 277 1 279 0.0 475.0
ORI96010069 97.49% 279 5 2 1 277 1 279 0.0 475.0
ORI96010300 97.47% 277 7 0 1 277 1 277 0.0 473.0
ORI96000419 97.47% 277 7 0 1 277 1 277 0.0 473.0
ORI96010081 97.47% 277 7 0 1 277 1 277 0.0 473.0
ORI96010077 97.47% 277 7 0 1 277 277 1 0.0 473.0
ORI96010075 97.47% 277 7 0 1 277 1 277 0.0 473.0
ORI96010067 97.47% 277 7 0 1 277 1 277 0.0 473.0
ORI96010065 97.47% 277 7 0 1 277 1 277 0.0 473.0
ORI10010032 97.11% 277 8 0 1 277 1 277 0.0 468.0
ORI92010322 95.07% 284 7 5 1 277 1 284 0.0 440.0
ORI95011022 87.41% 270 26 7 12 277 13 278 0.0 303.0
ORI96010087 87.01% 177 19 4 102 276 110 284 0.0 196.0
ORI93010646 87.01% 177 19 4 102 276 110 284 0.0 196.0
ORI10010038 87.28% 173 20 2 105 276 174 3 0.0 196.0
ORI10010084 86.71% 173 21 2 105 276 135 306 0.0 191.0
ORI10010145 85.71% 175 19 5 106 277 129 300 0.0 180.0
Found 37 BLAST matches
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