Basic Information

Assembly acc GCF_000026445.2
Acc NC_020133.1
OriID ORI97227661
Organism Mycobacterium liflandii 128FXT
Topology Circular
Lineage Bacteria ; Bacillati ; Actinomycetota ; Actinomycetes ; Mycobacteriales ; Mycobacteriaceae ; Mycobacterium ; Mycobacterium liflandii
Assembly Level Complete
Literature linkage Not linked
Chromosome size 6208955 nt
Chromosome GC content 65.62%
Indicator genes
  • dnaA      1... 1533nt
  • dnaN      2073... 3281nt
  • hemB      960459... 961442nt
  • hemE      2385732... 2386793nt
  • rpmH      6208281... 6208424nt
OriC location
  • 1534 ... 2072 nt
OriC Length
  • 539 nt
OriC AT Content
  • 0.449

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000337
Cluster members 26
Distinct accessions 26
Species / genera 5 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97209660 NZ_CP083741.1 Mycobacterium ulcerans 100.00% 100.00% Not linked
2 ORI97255827 NZ_CP023138.1 Mycobacterium liflandii 100.00% 100.00% Not linked
3 ORI97294046 NZ_CM165904.1 Mycobacterium pseudoshottsii 100.00% 100.00% Not linked
4 ORI97209107 NZ_CP058277.1 Mycobacterium marinum 99.80% 100.00% Not linked
5 ORI97249165 NZ_AP018410.1 Mycobacterium pseudoshottsii JCM 15466 99.60% 100.00% Not linked
6 ORI97252346 NZ_CP155055.1 Mycobacterium pseudoshottsii 99.60% 100.00% Not linked
7 ORI97258571 NZ_AP026367.1 Mycobacterium pseudoshottsii 99.40% 100.00% Not linked
8 ORI97267671 NZ_AP028092.1 Mycobacterium pseudoshottsii 99.40% 100.00% Not linked
9 ORI97209690 NZ_CP085200.1 Mycobacterium ulcerans 99.20% 100.00% Not linked
10 ORI97209976 NZ_CP092429.1 Mycobacterium ulcerans 99.20% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_020133.1
Open full view

Replication Initiation Protein Information

Gene Start Gene End Translation
1 1533 MTNDPGSGFAAVWNAVVAEL...

OriC Visualization

OriC map
OriC sequences
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaaTCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnan
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI60010254 99.07% 539 4 1 1 539 1 538 0.0 966.0
ORI92310402 98.33% 540 8 1 1 539 1 540 0.0 946.0
Found 2 BLAST matches
Return to browse page