Basic Information

Assembly acc GCF_012974105.1
Acc NZ_CP052855.1
OriID ORI97028866
Organism Xylella fastidiosa subsp. multiplex
Topology Circular
Lineage Bacteria ; Pseudomonadati ; Pseudomonadota ; Gammaproteobacteria ; Lysobacterales ; Lysobacteraceae ; Xylella ; Xylella fastidiosa
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2526544 nt
Chromosome GC content 51.98%
Indicator genes
  • dnaA      1... 1320nt
  • dnaN      1606... 2706nt
  • hemE      828385... 829449nt
  • gidA      1083459... 1085348nt
  • hemB      1430879... 1431883nt
  • rpmH      2526182... 2526322nt
OriC location
  • 1321 ... 1605 nt
OriC Length
  • 285 nt
OriC AT Content
  • 0.6947

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH000246
Cluster members 39
Distinct accessions 39
Species / genera 1 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI92310386 NC_010513.1 Xylella fastidiosa M12 100.00% 100.00% Not linked
2 ORI97020915 NZ_CP064325.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked
3 ORI97021470 NZ_CP090510.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked
4 ORI97028387 NZ_CP052853.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked
5 ORI97029261 NZ_CP052854.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked
6 ORI97030119 NZ_CP090513.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked
7 ORI97031352 NZ_CP072933.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked
8 ORI97031461 NZ_CP047134.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked
9 ORI97031518 NZ_CP072932.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked
10 ORI97032585 NZ_CP064326.1 Xylella fastidiosa subsp. multiplex 100.00% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP052855.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
1 1320 MESWSRCLERLETEFPPEDV...

OriC Visualization

OriC map
OriC sequences
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaaATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnan
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
dnaAATCCCCCCCCATTATATGACCACTCATTTTCTATAGAAACGTAGAAATAAATTAATTCTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTAGATTTTTATAAAAATTTATCCACAGATTTTCCAGGTGATCTAAGCCCAATAACTTAGGATCTTATACAGAGAGAAATAACAAATTAAACAACATCTTAGAGTACTTTTCCACAAAAAAATTTCTACCACCACCACCACCATAAGTTTTAAATATTTACTAAAAAGCATAGAGGCAAGGAACCAAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI92310386 100.00% 285 0 0 1 285 1 285 0.0 527.0
ORI96010143 95.02% 281 11 1 5 285 3 280 0.0 438.0
ORI92310397 94.68% 282 11 2 5 285 3 281 0.0 435.0
ORI10010087 94.68% 282 11 2 5 285 3 281 0.0 435.0
ORI10010009 91.79% 280 14 1 12 282 14 293 0.0 381.0
Found 5 BLAST matches
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