Basic Information

Assembly acc GCF_021474225.1
Acc NZ_CP090547.1
OriID ORI97026447
Organism Xylella fastidiosa subsp. sandyi
Topology Circular
Lineage Bacteria ; Pseudomonadati ; Pseudomonadota ; Gammaproteobacteria ; Lysobacterales ; Lysobacteraceae ; Xylella ; Xylella fastidiosa
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2756307 nt
Chromosome GC content 52.09%
Indicator genes
  • dnaA      1... 1320nt
  • dnaN      1604... 2704nt
  • hemE      711181... 712245nt
  • gidA      1843750... 1845639nt
  • hemB      1946192... 1947196nt
  • rpmH      2755942... 2756082nt
OriC location
  • 1321 ... 1603 nt
OriC Length
  • 283 nt
OriC AT Content
  • 0.7067

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH000246
Cluster members 39
Distinct accessions 39
Species / genera 1 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI97010874 NZ_CP006696.1 Xylella fastidiosa subsp. sandyi Ann-1 100.00% 100.00% Not linked
2 ORI10010087 NC_004556.1 Xylella fastidiosa Temecula1 97.80% 100.00% Not linked
3 ORI92310397 NC_010577.1 Xylella fastidiosa M23 97.80% 100.00% Not linked
4 ORI97021433 NZ_CP090514.1 Xylella fastidiosa subsp. fastidiosa 97.80% 100.00% Not linked
5 ORI97022821 NZ_CP060159.1 Xylella fastidiosa subsp. fastidiosa 97.80% 100.00% Not linked
6 ORI97024947 NZ_CP047171.1 Xylella fastidiosa subsp. fastidiosa 97.80% 100.00% Not linked
7 ORI97025792 NZ_CP064332.1 Xylella fastidiosa subsp. fastidiosa 97.80% 100.00% Not linked
8 ORI97028402 NZ_CP064334.1 Xylella fastidiosa subsp. fastidiosa 97.80% 100.00% Not linked
9 ORI97029286 NZ_CP090518.1 Xylella fastidiosa subsp. fastidiosa 97.80% 100.00% Not linked
10 ORI97031216 NZ_CP064330.1 Xylella fastidiosa subsp. fastidiosa 97.80% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NZ_CP090547.1
Open full view

Replication Initiation Protein Information

Gene Start Gene End Translation
1 1320 MESWSRCLERLETEFPPEDV...

OriC Visualization

OriC map
OriC sequences
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaaATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnan
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
dnaAATCCCCCCATTATATGACTACTCATTTTCTATAGAAATGTAGAAATAAATTAGCTGTTTCCAAGAAAGTGTAAAAAACTTGTGGATAAAATGCGATTTGGATTTTTATAAAAATTTATCCACAGATTTCCCAGGTGATCTAAGCAAAATAACTTAGGATCTTATACAGAGAAAAATAACAAATTAAACAACATCTTAGAGTACTTCTCCACAAAAAAATTTCTACCACCACCACCATCATAAGTTTTAAATATTAACTAAAAAGCATAGAGGTAAGGAACCAAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI96010143 98.23% 283 2 1 1 283 1 280 0.0 492.0
ORI92310397 97.89% 284 2 2 1 283 1 281 0.0 488.0
ORI10010087 97.89% 284 2 2 1 283 1 281 0.0 488.0
ORI92310386 95.02% 281 14 0 3 283 5 285 0.0 442.0
ORI10010009 91.79% 280 14 1 10 280 14 293 0.0 381.0
Found 5 BLAST matches
Return to browse page