ORI97025911 | DoriC 14.0: an updated database of prokaryotic replication origins with significantly expanded plasmid oriV annotations

Basic Information

Assembly acc	`GCF_003574175.1`
Acc	`NZ_AP017912.1`
OriID	ORI97025911
Organism	Geobacter sulfurreducens
Topology	Circular
Lineage	Bacteria ; Pseudomonadati ; Thermodesulfobacteriota ; Desulfuromonadia ; Geobacterales ; Geobacteraceae ; Geobacter ; Geobacter sulfurreducens
Assembly Level	Complete
Literature linkage	Not linked
Chromosome size	3726411 nt
Chromosome GC content	60.70%
Indicator genes	dnaA 30... 1367nt dnaN 1594... 2712nt hemB 134289... 135266nt dnaA 1153217... 1153945nt hemE 3712452... 3713474nt gidA 3720313... 3722196nt rpmH 3725954... 3726103nt
OriC location	1368 ... 1593 nt
OriC Length	226 nt
OriC AT Content	0.4779

Comparative Sequence Support

Recurrence category Multi-accession

Sequence cluster BC-OH001340

Cluster members 5

Distinct accessions 5

Species / genera 1 / 1

Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank	Ori ID	Accession	Organism	Identity	Reciprocal coverage	Literature linkage
1	`ORI10010027`	`NC_002939.4`	Geobacter sulfurreducens PCA	92.40%	100.00%	Not linked
2	`ORI96010092`	`NC_017454.1`	Geobacter sulfurreducens KN400	92.40%	100.00%	Not linked
3	`ORI97022656`	`NZ_CP074693.1`	Geobacter sulfurreducens	92.40%	100.00%	Not linked
4	`ORI97033349`	`NZ_CP078092.1`	Geobacter sulfurreducens	92.40%	100.00%	Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Replication Initiation Protein Information

Gene Start	Gene End	Translation
30	1367	MEEVWLQAQSNLAKVLTHQT...

OriC Visualization

OriC map

OriC sequences

dnaAGAGGCAACAACCCTGTGGACAGAGGAACGGTTATCGACATGCCCTTGCCCCTGTCCGAGCACGTCCGTGGATAACCCACGCCGTGCCCACAGGACGGCATAGTCAAAAAAGCGAGTTGTAAAGGGGCGTTGGGCGATTATCCCCATATCCACAGCCCCTACTGTTTCTACTGATCTTTAAAGAAAACATCACCATAACCATGATGACCTGTTGAAAAGGAGGAGCGdnaN

dnaaGAGGCAACAACCCTGTGGACAGAGGAACGGTTATCGACATGCCCTTGCCCCTGTCCGAGCACGTCCGTGGATAACCCACGCCGTGCCCACAGGACGGCATAGTCAAAAAAGCGAGTTGTAAAGGGGCGTTGGGCGATTATCCCCATATCCACAGCCCCTACTGTTTCTACTGATCTTTAAAGAAAACATCACCATAACCATGATGACCTGTTGAAAAGGAGGAGCGdnan

dnaAGAGGCAACAACCCTGTGGACAGAGGAACGGTTATCGACATGCCCTTGCCCCTGTCCGAGCACGTCCGTGGATAACCCACGCCGTGCCCACAGGACGGCATAGTCAAAAAAGCGAGTTGTAAAGGGGCGTTGGGCGATTATCCCCATATCCACAGCCCCTACTGTTTCTACTGATCTTTAAAGAAAACATCACCATAACCATGATGACCTGTTGAAAAGGAGGAGCGdnaN

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

BLAST Results

Subject ID	Identity (%)	Length	Mismatches	Gaps	Query Start	Query End	Subject Start	Subject End	E-value	Bit Score
ORI96010092	92.48%	226	17	0	1	226	1	226	0.0	324.0
ORI10010027	92.48%	226	17	0	1	226	1	226	0.0	324.0

Found 2 BLAST matches