Basic Information

Assembly acc GCF_000307535.1
Acc NC_018936.1
OriID ORI96010337
Organism Streptococcus pyogenes A20
Topology Circular
Lineage Bacteria ; Bacillati ; Bacillota ; Bacilli ; Lactobacillales ; Streptococcaceae ; Streptococcus ; Streptococcus pyogenes
Assembly Level Complete
Literature linkage Not linked
Chromosome size 1837281 nt
Chromosome GC content 38.54%
Indicator genes
  • dnaA      202... 1557nt
  • dnaN      1712... 2848nt
  • rpmH      217204... 217338nt
  • gidA      1802868... 1804766nt
OriC location
  • 1558 ... 1711 nt
OriC Length
  • 154 nt
OriC AT Content
  • 0.7078

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH000040
Cluster members 242
Distinct accessions 242
Species / genera 1 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI10010014 NC_002737.1 Streptococcus pyogenes M1 GAS 100.00% 100.00% Not linked
2 ORI10010150 NC_007297.1 Streptococcus pyogenes MGAS5005 100.00% 100.00% Not linked
3 ORI97010150 NC_020540.2 Streptococcus pyogenes M1 476 100.00% 100.00% Not linked
4 ORI97011068 NZ_CP007537.1 Streptococcus pyogenes 100.00% 100.00% Not linked
5 ORI97011159 NZ_CP008776.1 Streptococcus pyogenes 100.00% 100.00% Not linked
6 ORI97011811 NZ_CP012045.1 Streptococcus pyogenes 100.00% 100.00% Not linked
7 ORI97012251 NZ_CP014027.2 Streptococcus pyogenes 100.00% 100.00% Not linked
8 ORI97014176 NZ_LN831034.1 Streptococcus pyogenes 100.00% 100.00% Not linked
9 ORI97022011 NZ_CP040997.1 Streptococcus pyogenes 100.00% 100.00% Not linked
10 ORI97022922 NZ_CP028841.1 Streptococcus pyogenes 100.00% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_018936.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
202 1557 MTENEQIFWNRVLELAQSQL...

OriC Visualization

OriC map
OriC sequences
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaaCATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnan
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI96010337 100.00% 154 0 0 1 154 1 154 0.0 285.0
ORI10010150 100.00% 154 0 0 1 154 1 154 0.0 285.0
ORI10010014 100.00% 154 0 0 1 154 1 154 0.0 285.0
ORI96010171 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI92710450 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI90010283 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI20010198 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI20010196 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI20010194 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI10010148 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI10010113 99.35% 154 1 0 1 154 1 154 0.0 279.0
NC_018106 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI10010069 99.35% 154 1 0 1 154 1 154 0.0 279.0
ORI97017044 98.05% 154 3 0 1 154 1 154 0.0 268.0
ORI97017044 98.05% 154 3 0 1 154 1 154 0.0 268.0
ORI20010200 98.05% 154 3 0 1 154 1 154 0.0 268.0
ORI10010057 97.40% 154 1 1 1 154 1 151 0.0 259.0
Found 17 BLAST matches
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