Basic Information

Assembly acc GCF_000025145.1
Acc NC_017340.1
OriID ORI96010074
Organism Staphylococcus aureus 04-02981
Topology Circular
Lineage Bacteria ; Bacillati ; Bacillota ; Bacilli ; Caryophanales ; Staphylococcaceae ; Staphylococcus ; Staphylococcus aureus
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2821452 nt
Chromosome GC content 32.90%
Indicator genes
  • dnaA      517... 1878nt
  • dnaN      2156... 3289nt
  • hemB      1734913... 1735887nt
  • hemE      1919305... 1920342nt
  • gidA      2817147... 2819024nt
  • rpmH      2821101... 2821238nt
OriC location
  • 2821239 ... 516 nt
OriC Length
  • 730 nt
OriC AT Content
  • 0.7164

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000002
Cluster members 2409
Distinct accessions 2349
Species / genera 13 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI10010017 NC_002745.2 Staphylococcus aureus subsp. aureus N315 100.00% 100.00% Not linked
2 ORI10010019 NC_002758.2 Staphylococcus aureus subsp. aureus Mu50 100.00% 100.00% Not linked
3 ORI10010035 NC_002953.3 Staphylococcus aureus subsp. aureus MSSA476 100.00% 100.00% Not linked
4 ORI10010066 NC_003923.1 Staphylococcus aureus subsp. aureus MW2 100.00% 100.00% Not linked
5 ORI92210347 NC_009782.1 Staphylococcus aureus subsp. aureus Mu3 100.00% 100.00% Not linked
6 ORI93010600 NC_013450.1 Staphylococcus aureus subsp. aureus ED98 100.00% 100.00% Not linked
7 ORI96010080 NC_017343.1 Staphylococcus aureus subsp. aureus ECT-R 2 100.00% 100.00% Not linked
8 ORI97010790 NZ_AP017320.1 Staphylococcus aureus 100.00% 100.00% Not linked
9 ORI97011031 NZ_CP007454.1 Staphylococcus aureus 100.00% 100.00% Not linked
10 ORI97011582 NZ_CP010890.1 Staphylococcus aureus 100.00% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_017340.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
517 1878 MSEKEIWEKVLEIAQEKLSA...

OriC Visualization

OriC map
OriC sequences
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmhGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaa
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
rpmHGCAAAACACCTCCATCTTTATACAGTTATCTAATATACCAGATTATGCAGACTCTGATCACTTTAATAGATAAGATTTTGCGTTTCTTAGATTAAAATTCTCGTATTAGCTCATTGATTATCTAGTCATAATTCAAGCAACTACTACAATATAACAAAATCCTTTTTATAACGCAAGTTCATTTTATACTACTGCTCAATTTTTTTACTTTTATCGATTAAAGATAGAAATACACGATGCGAGCAATCAAATTTCATAACATCACCATGAGTTTGGTCCGAAGCATGAGTGTTTACAATGTTTGAATACCTTATACAGTTCTTATACATACTTTATAAATTATTTCCCAAGCTGTTTTGATACACTCACTAACAGATATTCTATAGAAGGAAAAGTTATCCACTTATGCACATTTATAGTTTTCAGAATTGTGGATAATTAGAAATTACACACAAAGTTATACTATTTTTAGCAACATATTCACAGGTATTTGACATATAGAGAACTGAAAAAGTATAATTGTGTGGATAAGTCGTCCAACTCATGATTTTATAAGGATTTATTTATTGATATTTACATAAAAATACTGTGCATAACTAATAAGCAGGATAAAGTTATCCACCGATTGTTATTAACTTGTGGATAATTATTAACATGGTGTGTTTAGAAGTTATCCACGGCTGTTATTTTTGTGTATAACTTAAAAATTTAAGAAAGATGGAGTAAATTTdnaA
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI96010080 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI96010074 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI93010600 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI92210347 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI92010319 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI90010305 100.00% 730 0 0 1 730 259 988 0.0 1349.0
ORI10010066 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI10010035 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI10010019 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI10010017 100.00% 730 0 0 1 730 1 730 0.0 1349.0
ORI96010086 99.86% 730 1 0 1 730 1 730 0.0 1343.0
ORI96010198 99.45% 730 4 0 1 730 1 730 0.0 1327.0
ORI96010084 99.18% 730 6 0 1 730 1 730 0.0 1315.0
ORI96010070 99.04% 730 7 0 1 730 1 730 0.0 1310.0
ORI95011011 99.04% 730 7 0 1 730 1 730 0.0 1310.0
ORI92010323 99.04% 730 7 0 1 730 1 730 0.0 1310.0
ORI10010184 99.04% 730 7 0 1 730 1 730 0.0 1310.0
ORI10010182 99.04% 730 7 0 1 730 1 730 0.0 1310.0
ORI10010031 99.04% 730 7 0 1 730 1 730 0.0 1310.0
ORI92210360 98.90% 730 8 0 1 730 1 730 0.0 1304.0
ORI10010177 98.90% 730 8 0 1 730 1 730 0.0 1304.0
ORI95011013 98.90% 730 7 1 1 730 1 729 0.0 1303.0
ORI96010082 98.77% 730 9 0 1 730 1 730 0.0 1299.0
ORI96010078 98.77% 730 9 0 1 730 730 1 0.0 1299.0
ORI96010076 98.77% 730 9 0 1 730 1 730 0.0 1299.0
ORI96010072 98.77% 730 9 0 1 730 1 730 0.0 1299.0
ORI96010068 98.77% 730 9 0 1 730 1 730 0.0 1299.0
ORI96010066 98.77% 730 9 0 1 730 1 730 0.0 1299.0
ORI10010033 98.77% 730 9 0 1 730 1 730 0.0 1299.0
ORI96010301 98.63% 730 10 0 1 730 1 730 0.0 1293.0
ORI95011023 90.34% 735 63 7 1 730 1 732 0.0 957.0
ORI10010146 77.91% 344 58 15 391 724 336 671 0.0 198.0
ORI10010146 82.26% 124 19 3 54 177 54 174 0.0 104.0
ORI10010039 90.00% 80 7 1 107 186 570 492 0.0 102.0
ORI93010645 96.67% 60 2 0 118 177 122 181 0.0 100.0
ORI10010085 91.55% 71 5 1 107 177 154 223 0.0 97.1
ORI96010088 95.08% 61 2 1 118 177 122 182 0.0 95.3
ORI94010800 100.00% 30 0 0 132 161 420 391 0.0 56.5
Found 38 BLAST matches
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