Basic Information

Assembly acc GCF_000024485.1
Acc NC_017268.1
OriID ORI96010041
Organism Treponema pallidum subsp. pallidum str. Chicago
Topology Circular
Lineage Bacteria ; Pseudomonadati ; Spirochaetota ; Spirochaetia ; Treponematales ; Treponemataceae ; Treponema ; Treponema pallidum
Assembly Level Complete
Literature linkage Not linked
Chromosome size 1139281 nt
Chromosome GC content 52.77%
Indicator genes
  • dnaA      4... 1398nt
  • dnaN      1641... 2756nt
  • gidA      52599... 54491nt
  • rpmH      1033732... 1033851nt
OriC location
  • 1399 ... 1640 nt
OriC Length
  • 242 nt
OriC AT Content
  • 0.6694

Comparative Sequence Support

Recurrence category Multi-accession
Sequence cluster BC-OH000118
Cluster members 77
Distinct accessions 77
Species / genera 2 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI10010003 NC_000919.1 Treponema pallidum subsp. pallidum str. Nichols 100.00% 100.00% Not linked
2 ORI92510425 NC_010741.1 Treponema pallidum subsp. pallidum SS14 100.00% 100.00% Not linked
3 ORI96010331 NC_018722.1 Treponema pallidum subsp. pallidum str. Mexico A 100.00% 100.00% Not linked
4 ORI97010300 NC_021179.1 Treponema pallidum str. Fribourg-Blanc 100.00% 100.00% Not linked
5 ORI97010356 NC_021490.2 Treponema pallidum subsp. pallidum str. Nichols 100.00% 100.00% Not linked
6 ORI97010365 NC_021508.1 Treponema pallidum subsp. pallidum SS14 100.00% 100.00% Not linked
7 ORI97017513 NZ_CP007548.1 Treponema pallidum subsp. endemicum str. Bosnia A 100.00% 100.00% Not linked
8 ORI97017558 NZ_CP010422.1 Treponema pallidum subsp. pallidum 100.00% 100.00% Not linked
9 ORI97017559 NZ_CP010558.1 Treponema pallidum subsp. pallidum 100.00% 100.00% Not linked
10 ORI97017560 NZ_CP010559.1 Treponema pallidum subsp. pallidum 100.00% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_017268.1
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Replication Initiation Protein Information

Gene Start Gene End Translation
4 1398 MDAVGYEVFWNETLSQIRSE...

OriC Visualization

OriC map
OriC sequences
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaaGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnan
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
dnaAGGCGTAGACACTGAATTCGATGGGGATAAGTGGTGGATAAAAGAATATAAATTAGTCATTACACTTTACTCACGAATATCCCCCTTTTTTTAGAGAAAAAATATACTTTCTTCACAAGCTTGTGTGCGGTTTTTGTTTGGTAATTCTCGAGACATAAGCACTTATCCAGATATTCACAGTTACTATTATGTGATACGACTACATTCTTTATACTTATAAGATTAATAAGGAGGAAACTAACTdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI96010331 100.00% 242 0 0 1 242 1 242 0.0 448.0
ORI96010041 100.00% 242 0 0 1 242 1 242 0.0 448.0
ORI95011004 100.00% 242 0 0 1 242 1 242 0.0 448.0
ORI95011003 100.00% 242 0 0 1 242 1 242 0.0 448.0
ORI95011002 100.00% 242 0 0 1 242 1 242 0.0 448.0
ORI95011001 100.00% 242 0 0 1 242 1 242 0.0 448.0
ORI92510425 100.00% 242 0 0 1 242 1 242 0.0 448.0
ORI10010003 100.00% 242 0 0 1 242 1 242 0.0 448.0
ORI94010889 97.12% 243 6 1 1 242 1 243 0.0 409.0
Found 9 BLAST matches
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