Basic Information

Assembly acc GCF_000011525.1
Acc NC_002953.3
OriID ORI10010034
Organism Staphylococcus aureus subsp. aureus MSSA476
Topology Circular
Lineage Bacteria ; Bacillati ; Bacillota ; Bacilli ; Caryophanales ; Staphylococcaceae ; Staphylococcus ; Staphylococcus aureus
Assembly Level Complete
Literature linkage Not linked
Chromosome size 2799802 nt
Chromosome GC content 32.85%
Indicator genes
  • dnaA      517... 1878nt
  • dnaN      2156... 3289nt
  • hemB      1719035... 1720009nt
  • hemE      1907624... 1908661nt
  • gidA      2795515... 2797392nt
  • rpmH      2799451... 2799588nt
OriC location
  • 1879 ... 2155 nt
OriC Length
  • 277 nt
OriC AT Content
  • 0.7004

Comparative Sequence Support

Recurrence category Cross-taxon
Sequence cluster BC-OH000008
Cluster members 912
Distinct accessions 912
Species / genera 3 / 1
Literature-linked members 0

Comparative Sequence Support describes recurrence of similar candidate sequences, not the reliability of the original prediction. Cross-taxon describes representation across source taxa, not experimentally measured host range; Singleton denotes one origin record under the current dataset and thresholds, not biological novelty. Accession counts do not establish independence of biological samples. Literature linkage is reported separately. The four origin categories are clustered independently.

Top 10 most similar Ori IDs

Rank Ori ID Accession Organism Identity Reciprocal coverage Literature linkage
1 ORI10010030 NC_002951.2 Staphylococcus aureus subsp. aureus COL 100.00% 100.00% Not linked
2 ORI10010065 NC_003923.1 Staphylococcus aureus subsp. aureus MW2 100.00% 100.00% Not linked
3 ORI10010181 NC_007793.1 Staphylococcus aureus subsp. aureus USA300_FPR3757 100.00% 100.00% Not linked
4 ORI10010183 NC_007795.1 Staphylococcus aureus subsp. aureus NCTC 8325 100.00% 100.00% Not linked
5 ORI92210359 NC_010079.1 Staphylococcus aureus subsp. aureus USA300_TCH1516 100.00% 100.00% Not linked
6 ORI95011010 NC_016912.1 Staphylococcus aureus subsp. aureus VC40 100.00% 100.00% Not linked
7 ORI97014230 NZ_LT615218.1 Staphylococcus aureus 100.00% 100.00% Not linked
8 ORI97014245 NZ_LT671859.1 Staphylococcus aureus 100.00% 100.00% Not linked
9 ORI97033735 NZ_LR130509.1 Staphylococcus aureus 100.00% 100.00% Not linked
10 ORI97034109 NZ_LR130518.1 Staphylococcus aureus 100.00% 100.00% Not linked

The interactive Z-curves rotated at the maximum of the GC disparity.

RIP Sequence-Similarity Network

Bacteria Chromosomes 1,537 RIP sequence subfamilies from 66,403 proteins (Complete/Chromosome only) Accession: NC_002953.3
Open full view

Replication Initiation Protein Information

Gene Start Gene End Translation
517 1878 MSEKEIWEKVLEIAQEKLSA...

OriC Visualization

OriC map
OriC sequences
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaaGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnan
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
dnaAGTAGGAAACTTTGGGAAATGTAATCTGTTATATAACAGCACTAATGATAACAATCATTTTTTACATTTCTATATGCTAATGTGGCAAGATGAGCAAAACTCATTTTGTGGATAATGTTTAAAAGTCATACACACCATACACAAGTTATCAACATGTGTATAACTTCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTTAATTAdnaN
5'-DnaA box-3'    3'-DnaA box-5'   Spacer   DnaA-trio   ATP-DnaA box
AT-rich region   GATC   CtrA binding motif   Fis binding site   IHF binding site

BLAST Results

Subject ID Identity (%) Length Mismatches Gaps Query Start Query End Subject Start Subject End E-value Bit Score
ORI95011010 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI92210359 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI10010183 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI10010181 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI10010065 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI10010034 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI10010030 100.00% 277 0 0 1 277 1 277 0.0 512.0
ORI96010071 99.64% 277 1 0 1 277 1 277 0.0 507.0
ORI96010083 98.93% 279 1 2 1 277 1 279 0.0 497.0
ORI96010069 98.93% 279 1 2 1 277 1 279 0.0 497.0
ORI96010300 98.92% 277 3 0 1 277 1 277 0.0 496.0
ORI96000419 98.92% 277 3 0 1 277 1 277 0.0 496.0
ORI96010081 98.92% 277 3 0 1 277 1 277 0.0 496.0
ORI96010077 98.92% 277 3 0 1 277 277 1 0.0 496.0
ORI96010075 98.92% 277 3 0 1 277 1 277 0.0 496.0
ORI96010067 98.92% 277 3 0 1 277 1 277 0.0 496.0
ORI96010065 98.92% 277 3 0 1 277 1 277 0.0 496.0
ORI95011012 98.92% 277 3 0 1 277 1 277 0.0 496.0
ORI10010032 98.56% 277 4 0 1 277 1 277 0.0 490.0
ORI96010197 98.20% 277 5 0 1 277 1 277 0.0 484.0
ORI96010085 98.20% 277 5 0 1 277 1 277 0.0 484.0
ORI10010176 98.20% 277 5 0 1 277 1 277 0.0 484.0
ORI96010079 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI96010073 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI93010599 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI92210346 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI92010318 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI90010304 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI10010018 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI10010016 97.83% 277 6 0 1 277 1 277 0.0 479.0
ORI92010322 97.18% 284 1 5 1 277 1 284 0.0 473.0
ORI95011022 88.19% 271 22 8 12 277 13 278 0.0 315.0
ORI96010087 87.57% 177 18 4 102 276 110 284 0.0 202.0
ORI93010646 87.57% 177 18 4 102 276 110 284 0.0 202.0
ORI10010038 87.86% 173 19 2 105 276 174 3 0.0 202.0
ORI10010084 87.28% 173 20 2 105 276 135 306 0.0 196.0
ORI10010145 86.29% 175 18 6 106 277 129 300 0.0 185.0
Found 37 BLAST matches
Return to browse page