DoriC

RefSeq

NC_025008

DoriC accession number

pORI00000299

OriC length

564 nt

OriC AT content

0.6206

The location of oriC region

3058..3621 nt

Browse in NCBI

OriC map

OriC sequences

ATCGTTAAGGGATCAACTTTGGGAGAGAGTTCAAAATTGATCCTTTTTTTATAACAGGAATTCAAATCTTTTTGTTCCATTAAAGGGCGCGATTGCTGAATAAAAGATACGAGAGACCTCTCTTGTATCTTTTTTATTTTGAGTGGTTTTGTCCGTTACACTAGAAAACCGAAAGACAATAAAAATTTTATTCTTGCTGAGTCTGGCTTTCGGTAAGCTAGACAAAACGGACAAAATAAAAATTGGCAAGGGTTTAAAGGTGGAGATTTTTTGAGTGATCTTCTCAAAAAATACTACCTGTCCCTTGCTGATTTTTAAACGAGCACGAGAGCAAAACCCCCCTTTGCTGAGGTGGCAGAGGGCAGGTTTTTTTGTTTCTTTTTTCTCGTAAAAAAAAGAAAGGTCTTAAAGGTTTTATGGTTTTGGTCGGCACTGCCGACAGCCTCGCAGAGCACACACTTTATGAATATAAAGTATAGTGTGTTTATACTTTACTTGGAAGTGGTTGCCGGAAAGAGCGAAAATGCCTCACATTTGTGCCACCTAAAAAGGAGCGATTTACAT

AT-rich region

The information of repeat sequences

Motif TTTTYTKDGTCKKBNTTBCCGTAAVVHDVRVAAANSNCWCAM

Start	P-value		Site
418	2.05e-15	AAAGGTTTTA	TGGTTTTGGTCGGCACTGCCGACAGCCTCGCAGAGCACACAC	TTTATGAATA
193	4.00e-14	AAATTTTATT	CTTGCTGAGTCTGGCTTTCGGTAAGCTAGACAAAACGGACAA	AATAAAAATT
491	1.33e-13	GTGTTTATAC	TTTACTTGGAAGTGGTTGCCGGAAAGAGCGAAAATGCCTCAC	ATTTGTGCCA
135	8.77e-13	GTATCTTTTT	TATTTTGAGTGGTTTTGTCCGTTACACTAGAAAACCGAAAGA	CAATAAAAAT
368	3.33e-12	GAGGGCAGGT	TTTTTTGTTTCTTTTTTCTCGTAAAAAAAAGAAAGGTCTTAA	AGGTTTTATG

Motif CSHTTGCTGA

Start	P-value		Site
302	3.35e-07	TACTACCTGT	CCCTTGCTGA	TTTTTAAACG
341	1.59e-06	GCAAAACCCC	CCTTTGCTGA	GGTGGCAGAG
90	3.67e-06	TTAAAGGGCG	CGATTGCTGA	ATAAAAGATA

Motif ACGAGAG

Start	P-value		Site
325	4.47e-05	TTAAACGAGC	ACGAGAG	CAAAACCCCC
109	4.47e-05	AATAAAAGAT	ACGAGAG	ACCTCTCTTG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000299	100.0	564	0	0	1	564	1	564	0.0	1042
pORI00000235	99.8	501	0	1	1	501	500	1	0.0	918