DoriC

RefSeq

NC_001705

DoriC accession number

pORI00000235

OriC length

500 nt

OriC AT content

0.63

The location of oriC region

1138..1637 nt

Browse in NCBI

OriC map

OriC sequences

TTCCAAGTAAAGTATAACACACTATACTTTATATTCATAAAGTGTGTGCTCTGCGAGGCTGTCGGCAGTGCCGACCAAAACCATAAAACCTTTAAGACCTTTCTTTTTTTTACGAGAAAAAAGAAACAAAAAAACCTGCCCTCTGCCACCTCAGCAAAGGGGGGTTTTGCTCTCGTGCTCGTTTAAAAATCAGCAAGGGACAGGTAGTATTTTTTGAGAAGATCACTCAAAAAATCTCCACCTTTAAACCCTTGCCAATTTTTATTTTGTCCGTTTTGTCTAGCTTACCGAAAGCCAGACTCAGCAAGAATAAAATTTTTATTGTCTTTCGGTTTTCTAGTGTAACGGACAAAACCACTCAAAATAAAAAAGATACAAGAGAGGTCTCTCGTATCTTTTATTCAGCAATCGCGCCCTTTAATGGAACAAAAAGATTTGAATTCCTGTTATAAAAAAAGGATCAATTTTGAACTCTCTCCCAAAGTTGATCCCTTAACGAT

AT-rich region

The information of repeat sequences

Motif TCAGCAADGS

Start	P-value		Site
190	3.17e-07	CGTTTAAAAA	TCAGCAAGGG	ACAGGTAGTA
151	5.19e-06	CTCTGCCACC	TCAGCAAAGG	GGGGTTTTGC
402	1.19e-05	TATCTTTTAT	TCAGCAATCG	CGCCCTTTAA
62	1.45e-05	TGCGAGGCTG	TCGGCAGTGC	CGACCAAAAC
50	1.45e-05	AAGTGTGTGC	TCTGCGAGGC	TGTCGGCAGT

Motif YTTTAHDVYCTTKCBNDTTT

Start	P-value		Site
165	8.13e-09	CAAAGGGGGG	TTTTGCTCTCGTGCTCGTTT	AAAAATCAGC
90	1.32e-08	ACCATAAAAC	CTTTAAGACCTTTCTTTTTT	TTACGAGAAA
317	1.47e-08	AGAATAAAAT	TTTTATTGTCTTTCGGTTTT	CTAGTGTAAC
242	1.47e-08	AAATCTCCAC	CTTTAAACCCTTGCCAATTT	TTATTTTGTC

Motif GARSTCTCTC

Start	P-value		Site
381	3.43e-07	AGATACAAGA	GAGGTCTCTC	GTATCTTTTA
469	2.41e-06	GATCAATTTT	GAACTCTCTC	CCAAAGTTGA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000235	100.0	500	0	0	1	500	1	500	0.0	924
pORI00000299	99.8	501	0	1	1	500	501	1	0.0	918