DoriC

RefSeq

NC_009716

DoriC accession number

pORI00000417

OriC length

675 nt

OriC AT content

0.6

The location of oriC region

4062..4736 nt

Browse in NCBI

OriC map

OriC sequences

AAAAACCCTTTTATTTTTGTTGTGTCGCAGCTTCAAAAATGAGGGTTTTTTTTCTACATGTCAAATTGAAAATATCCCTTGTGTAGCAAGGGGAAAGTGCCAAAATCAATCCCAGAGTTATCCCTTAAGTATCAAGTAAAGTATTTTTGACCGTATTTTTGACCGTATTTTTGACCGTATTTTTGACCGTATTTTTGACCGTATTTTTCTAAATTTTTTATAACCAGTTATCATTCTAGATCGAATAACCAGCTAAAAACTCATAACCACCCATCCCCCCGCCCTTCCCGCCAGCGGGAAGGGAGCTGTTCGCCACATGGCAGGAGTGCAGGGAGAATAAGCTGCGCTACGCTTGCTTCTCTTCCCCGCACTCTATGCGATAAGCATATCGTCACGCTCACAGCGTCAAGGCCAAGCCGCTTACGCGGTCGCTACGCGAGCCTTGACTCTGCTCTCGTTCCTTTTCTTTGATTTTTACCGTTGAGCATGAAGTGCGAATAAGTTTTTTCGTGCAGGACTAGTCCTGCACCTAACCTGCCCTTCATTTTAACTGTTTTTTTTCAAGATTTTTTAAAGCCGATCTTTCAATCTTTTTAAATTTAAAAAGATAGTTTTAAATCTTTAAAAATCTTGAGACATAATAAAAAAAAGCCCCAAATATGGGGCTTTTTTCTC

AT-rich region

The information of repeat sequences

Motif ATTTTTGACCG

Start	P-value		Site
191	4.55e-07	TTTTGACCGT	ATTTTTGACCG	TATTTTTCTA
179	4.55e-07	TTTTGACCGT	ATTTTTGACCG	TATTTTTGAC
167	4.55e-07	TTTTGACCGT	ATTTTTGACCG	TATTTTTGAC
155	4.55e-07	TTTTGACCGT	ATTTTTGACCG	TATTTTTGAC
143	4.55e-07	CAAGTAAAGT	ATTTTTGACCG	TATTTTTGAC

Motif CCVKTGDGHAKSRAG

Start	P-value		Site
478	2.24e-08	TTGATTTTTA	CCGTTGAGCATGAAG	TGCGAATAAG
76	5.60e-08	TTGAAAATAT	CCCTTGTGTAGCAAG	GGGAAAGTGC
321	1.35e-07	CGCCACATGG	CAGGAGTGCAGGGAG	AATAAGCTGC
291	1.77e-07	GCCCTTCCCG	CCAGCGGGAAGGGAG	CTGTTCGCCA
122	7.42e-07	CCAGAGTTAT	CCCTTAAGTATCAAG	TAAAGTATTT

Motif CBCWTMCSCSSDCBCTWYSCG

Start	P-value		Site
418	3.41e-11	AAGGCCAAGC	CGCTTACGCGGTCGCTACGCG	AGCCTTGACT
359	5.52e-11	ACGCTTGCTT	CTCTTCCCCGCACTCTATGCG	ATAAGCATAT
270	2.09e-10	CTCATAACCA	CCCATCCCCCCGCCCTTCCCG	CCAGCGGGAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000417	100.0	675	0	0	1	675	1	675	0.0	1247
pORI00000353	98.815	675	5	3	1	675	672	1	0.0	1199