DoriC

RefSeq

NC_001845

DoriC accession number

pORI00000353

OriC length

672 nt

OriC AT content

0.6042

The location of oriC region

1249..240 nt

Browse in NCBI

OriC map

OriC sequences

GAGAAAAAAGCCCCATATTTGGGGCTTTTTTTTATTATGTCTCAAGATTTTTAAAGATTTAAAACTATCTTTTTAAATTTAAAAAGATTGAAAGATCGGCTTTAAAAAATCTTGAAAAAAAACAGTTAAAATGAAGGGCAGGTTAGGTGCAGGACTAGTCCTGCACGAAAAAACTTATTCGCACTTCATGCTCAACGGTAAAAATCAAAGAAAAGGAACGAGAGCAGAGTCAAGGCTCGCGTAGACCCGCGTAAGGCTTTGGCCTTGACGCTGTGAGCGTGACGATATGCTTATCGCATAGAGTGCGGGGAAGAGAAGCAAGCGTACCGAGCTTATTCTCCCTGCACTCCTGCCATGTGGCGAACAGCTCCCTTCCCGCTGGCGGGAAGGGCGGGGGGATGGGTGGTTATGAGTTTTTAGCTGGTTATTCGATCTAGAATGATAACTGGTTATAAAAAATTTAGAAAAATACGGTCAAAAATACGGTCAAAAATACGGTCAAAAATACGGTCAAAAATACGGTCAAAAATACTTTACTTGATACTTAAGGGATAACTCTGGGATTGATTTTGGCACTTTCCCCTTGCTACACAAGGGATATTTTCAATTTGACATGTAGAAAAAAAACCCTCATTTTTGAAGCTGCGACACAACAAAAATAAAAGGGTTTTT

AT-rich region

The information of repeat sequences

Motif AAAATACGGTC

Start	P-value		Site
514	4.58e-07	AATACGGTCA	AAAATACGGTC	AAAAATACTT
502	4.58e-07	AATACGGTCA	AAAATACGGTC	AAAAATACGG
490	4.58e-07	AATACGGTCA	AAAATACGGTC	AAAAATACGG
478	4.58e-07	AATACGGTCA	AAAATACGGTC	AAAAATACGG
466	4.58e-07	AAAATTTAGA	AAAATACGGTC	AAAAATACGG

Motif CTYSMTDCHCAMBGG

Start	P-value		Site
184	2.14e-08	CTTATTCGCA	CTTCATGCTCAACGG	TAAAAATCAA
583	5.36e-08	GCACTTTCCC	CTTGCTACACAAGGG	ATATTTTCAA
338	1.30e-07	CGAGCTTATT	CTCCCTGCACTCCTG	CCATGTGGCG
368	1.71e-07	TGGCGAACAG	CTCCCTTCCCGCTGG	CGGGAAGGGC
537	7.26e-07	AAATACTTTA	CTTGATACTTAAGGG	ATAACTCTGG

Motif GKGCRGG

Start	P-value		Site
389	2.13e-05	CTGGCGGGAA	GGGCGGG	GGGATGGGTG
303	4.68e-05	ATCGCATAGA	GTGCGGG	GAAGAGAAGC
136	7.89e-05	TTAAAATGAA	GGGCAGG	TTAGGTGCAG
147	1.17e-04	GGCAGGTTAG	GTGCAGG	ACTAGTCCTG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000353	100.0	672	0	0	1	672	1	672	0.0	1242
pORI00000417	98.815	675	5	3	1	672	675	1	0.0	1199