DoriC

RefSeq

NC_003124

DoriC accession number

pORI00000136

OriC length

2134 nt

OriC AT content

0.4681

The location of oriC region

1851..3984 nt

Browse in NCBI

OriC map

OriC sequences

GAATCAAGATCAAAGGAGAAATCACGGCAGAACGCCTAGCGGAAGCACTGCACGCAGCAGCAGAAAAATACGAAGCTGTGAGGCCGGGGCACAAGGTCTATGGGGCCAATCTCTACCTAACCGCCTTCGATGCTGATGGTCTGCCGTTCGATCTGGTAGACCATCGCGGCGAACCGCTTTCGATCACCATCGAGGCCAAGTCTGGCGAACTGGTAAAACCAGCACTCACAGCAGAGGGTGAAGCACACCGACAGAAAGCCAAAGAGGAAGCACGAAGGCAAGCTGAAGAAGCGGAAGCTGAAGCACAGCGCAGACACAGGCAAACCTTAGACGAATACGAACAGGAGCGGCAAAAACGACGGAAAAAGGAAGCCGAAGCAAGAAAGCAATTTGAGGACGCGAACGCAATCACTGCCGAACTCTTGAAAACCATGCCGGAACGCTTCATCGACGAACTGAACAAAACCGTGCAAGGCGTTTGGGACGACCTCAAGCCAACCGAAACGCAAGGCAAGAAGAAGGGCCAGCCGAAAGCGCTACCAGTCTTTTCCATCCATGCGGACGGGCTGGTGCTTTCCGTCGAGACATGGAAGAACCCGCGCCGGGTTCTCAATCCGCTTTGCACACTCCAGCACGGCGAAATAGCCCCATTCTGGATGCACGAAGCGTGGTTAGAAGCCATGAGGCGGATAGTCGATCTGCTGGATACGCTCACCGCAGCCCCGGCAGAGGCCCTAGAAAGCCAGTAGAGGCGTTTTCGCCTGCAAGGAAGGGGGTAGCGGCGGGGCGGGGGCGGGGGTGTGTCTGCAAGGGCTTTAGCCCGCGCAGGGCGAAGCCCGAAGGCAAGGCTTCAGACGACGCCTAAAGCGGCGGCTGAAAGCCGCGCATGGTAGAAGTTCTTTAGAACTTCTTAGACCGGAATTTTGGAAAAACGCGAAAACTCAGTACTGACAAGGGTTTGCGGGCGTTTTTGTGGCTTGTCAGGTTACCACCTGCGCCGGGGGTGGTTACCACCTGCGCCGGGGGTGGTTACCACCTGCGCCGGGGGCTTGAATTAAATTAGATAAATCTCTTATTGATAGACAAACACACTACACTTAATACCCATTATGTTAAAAACGACAGGATTCATGAAAATCATCAGAATTGTGCAGGATGGTTCACCTATCGATTAGATATGGGGTCTGAAGGCCAATAGAACGAAAACGTACGTTAGTGAAGTAACTGTCTGATATATCGAAACATAATGTACATTGGAAAACGCCATCAAAACGGTGTCTTTTTAATCGAAAATTGGCACTTAACGGACTTTCTTGTCTACTAATCGATTTTTCAGACGATAATTTTCCTCTTACCGTACGTTTTCGTACGGTTGGACCTCAAACCCCTTTGAGCGTGGCAAGCTGCACAAAGGGATAGGGCGGCACCAGAGAAAAATCACTCAGGGTCAATGCCAGCGCTTCGTTAATACAGATGTAGGTGTTCCACAGGGTAGCCAGCAGCATCCTGCGATGCAGATCCGGAACATAATGGTGCAGGGCGCTGACTTCCGGTGCCAGCAGATATTTTGGCAGTTTGCCTTGGATCAGAGCCATCTGACGCAGGGCTAGTGCAGCCGGATAGTCAATAGCTACCGGCAGCGGTGCGGACTGTTGTAACTCAGAATAAGAAATGAGGCCGCTCATGGCGTTGACTCTCAGTCATAGTATCGTGGTATCACCGGTTGGTTCCACTCTCTGTTGCGGGCAACTTCAGCAGCACGTAGGGGACTTCCGCGTTTCCAGACTTTACGAAACACGGAAACCGAAGACCATTCATGTTGTTGCTCAGGTCGCAGACGTTTTGCAGCAGCAGTCGCTTCACGTTCGCTCGCGTATCGGTGATTCATTCTGCTAACCAGTAAGGCAACCCCGCCAGCCTAGCCGGGTCCTCAACGACAGGAGCACGATCATGCGCACCCGTGGCCAGGACCCAACGCTGCCCGAGATGCGCCGCGTGCGGCTGCTGGAGATGGCGGACGCGATGGATATGTTCTGCCAAGGGTTGGTTTGCGCATTCACAGTTCTCCGCAAGAATTGATTGGCTCCAATTCTTGGAGTGGTGAATCCGTTAGCGAGGTGCCGCCGGCTTCCAT

AT-rich region

The information of repeat sequences

Motif GTTACCACCTGCGCCGGGGGY

Start	P-value		Site
1007	2.87e-13	GCCGGGGGTG	GTTACCACCTGCGCCGGGGGT	GGTTACCACC
985	2.87e-13	GGCTTGTCAG	GTTACCACCTGCGCCGGGGGT	GGTTACCACC
1029	6.45e-13	GCCGGGGGTG	GTTACCACCTGCGCCGGGGGC	TTGAATTAAA
589	1.86e-10	GTCGAGACAT	GGAAGAACCCGCGCCGGGTTC	TCAATCCGCT

Motif TTNVCGKDCGTTYTBGT

Start	P-value		Site
1352	3.15e-10	AATTTTCCTC	TTACCGTACGTTTTCGT	ACGGTTGGAC
1301	6.80e-09	AAATTGGCAC	TTAACGGACTTTCTTGT	CTACTAATCG
958	2.92e-08	CTGACAAGGG	TTTGCGGGCGTTTTTGT	GGCTTGTCAG
1859	5.25e-08	CAGCAGTCGC	TTCACGTTCGCTCGCGT	ATCGGTGATT
141	9.90e-08	TGCTGATGGT	CTGCCGTTCGATCTGGT	AGACCATCGC

Motif CDAACCGCTTT

Start	P-value		Site
170	4.87e-07	ACCATCGCGG	CGAACCGCTTT	CGATCACCAT
611	1.08e-06	GCCGGGTTCT	CAATCCGCTTT	GCACACTCCA
1381	1.37e-06	GGTTGGACCT	CAAACCCCTTT	GAGCGTGGCA
117	1.54e-06	CAATCTCTAC	CTAACCGCCTT	CGATGCTGAT
1321	3.17e-06	TTCTTGTCTA	CTAATCGATTT	TTCAGACGAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000136	100.0	2134	0	0	1	2134	1	2134	0.0	3941
pORI00000135	98.98	2156	0	1	1	2134	1	2156	0.0	3840