DoriC

RefSeq

NC_003123

DoriC accession number

pORI00000135

OriC length

2156 nt

OriC AT content

0.4661

The location of oriC region

1851..4006 nt

Browse in NCBI

OriC map

OriC sequences

GAATCAAGATCAAAGGAGAAATCACGGCAGAACGCCTAGCGGAAGCACTGCACGCAGCAGCAGAAAAATACGAAGCTGTGAGGCCGGGGCACAAGGTCTATGGGGCCAATCTCTACCTAACCGCCTTCGATGCTGATGGTCTGCCGTTCGATCTGGTAGACCATCGCGGCGAACCGCTTTCGATCACCATCGAGGCCAAGTCTGGCGAACTGGTAAAACCAGCACTCACAGCAGAGGGTGAAGCACACCGACAGAAAGCCAAAGAGGAAGCACGAAGGCAAGCTGAAGAAGCGGAAGCTGAAGCACAGCGCAGACACAGGCAAACCTTAGACGAATACGAACAGGAGCGGCAAAAACGACGGAAAAAGGAAGCCGAAGCAAGAAAGCAATTTGAGGACGCGAACGCAATCACTGCCGAACTCTTGAAAACCATGCCGGAACGCTTCATCGACGAACTGAACAAAACCGTGCAAGGCGTTTGGGACGACCTCAAGCCAACCGAAACGCAAGGCAAGAAGAAGGGCCAGCCGAAAGCGCTACCAGTCTTTTCCATCCATGCGGACGGGCTGGTGCTTTCCGTCGAGACATGGAAGAACCCGCGCCGGGTTCTCAATCCGCTTTGCACACTCCAGCACGGCGAAATAGCCCCATTCTGGATGCACGAAGCGTGGTTAGAAGCCATGAGGCGGATAGTCGATCTGCTGGATACGCTCACCGCAGCCCCGGCAGAGGCCCTAGAAAGCCAGTAGAGGCGTTTTCGCCTGCAAGGAAGGGGGTAGCGGCGGGGCGGGGGCGGGGGTGTGTCTGCAAGGGCTTTAGCCCGCGCAGGGCGAAGCCCGAAGGCAAGGCTTCAGACGACGCCTAAAGCGGCGGCTGAAAGCCGCGCATGGTAGAAGTTCTTTAGAACTTCTTAGACCGGAATTTTGGAAAAACGCGAAAACTCAGTACTGACAAGGGTTTGCGGGCGTTTTTGTGGCTTGTCAGGTTACCACCTGCGCCGGGGGTGGTTACCACCTGCGCCGGGGGTGGTTACCACCTGCGCCGGGGGTGGTTACCACCTGCGCCGGGGGCTTGAATTAAATTAGATAAATCTCTTATTGATAGACAAACACACTACACTTAATACCCATTATGTTAAAAACGACAGGATTCATGAAAATCATCAGAATTGTGCAGGATGGTTCACCTATCGATTAGATATGGGGTCTGAAGGCCAATAGAACGAAAACGTACGTTAGTGAAGTAACTGTCTGATATATCGAAACATAATGTACATTGGAAAACGCCATCAAAACGGTGTCTTTTTAATCGAAAATTGGCACTTAACGGACTTTCTTGTCTACTAATCGATTTTTCAGACGATAATTTTCCTCTTACCGTACGTTTTCGTACGGTTGGACCTCAAACCCCTTTGAGCGTGGCAAGCTGCACAAAGGGATAGGGCGGCACCAGAGAAAAATCACTCAGGGTCAATGCCAGCGCTTCGTTAATACAGATGTAGGTGTTCCACAGGGTAGCCAGCAGCATCCTGCGATGCAGATCCGGAACATAATGGTGCAGGGCGCTGACTTCCGGTGCCAGCAGATATTTTGGCAGTTTGCCTTGGATCAGAGCCATCTGACGCAGGGCTAGTGCAGCCGGATAGTCAATAGCTACCGGCAGCGGTGCGGACTGTTGTAACTCAGAATAAGAAATGAGGCCGCTCATGGCGTTGACTCTCAGTCATAGTATCGTGGTATCACCGGTTGGTTCCACTCTCTGTTGCGGGCAACTTCAGCAGCACGTAGGGGACTTCCGCGTTTCCAGACTTTACGAAACACGGAAACCGAAGACCATTCATGTTGTTGCTCAGGTCGCAGACGTTTTGCAGCAGCAGTCGCTTCACGTTCGCTCGCGTATCGGTGATTCATTCTGCTAACCAGTAAGGCAACCCCGCCAGCCTAGCCGGGTCCTCAACGACAGGAGCACGATCATGCGCACCCGTGGCCAGGACCCAACGCTGCCCGAGATGCGCCGCGTGCGGCTGCTGGAGATGGCGGACGCGATGGATATGTTCTGCCAAGGGTTGGTTTGCGCATTCACAGTTCTCCGCAAGAATTGATTGGCTCCAATTCTTGGAGTGGTGAATCCGTTAGCGAGGTGCCGCCGGCTTCCAT

AT-rich region

The information of repeat sequences

Motif GGTTACCACCTGCGCCGGGGG

Start	P-value		Site
1050	4.18e-13	CGCCGGGGGT	GGTTACCACCTGCGCCGGGGG	CTTGAATTAA
1028	4.18e-13	CGCCGGGGGT	GGTTACCACCTGCGCCGGGGG	TGGTTACCAC
1006	4.18e-13	CGCCGGGGGT	GGTTACCACCTGCGCCGGGGG	TGGTTACCAC
984	4.18e-13	TGGCTTGTCA	GGTTACCACCTGCGCCGGGGG	TGGTTACCAC
812	8.93e-10	TGTCTGCAAG	GGCTTTAGCCCGCGCAGGGCG	AAGCCCGAAG

Motif TTNVCGKDCGTTYTBGT

Start	P-value		Site
1374	4.11e-10	AATTTTCCTC	TTACCGTACGTTTTCGT	ACGGTTGGAC
1323	6.59e-09	AAATTGGCAC	TTAACGGACTTTCTTGT	CTACTAATCG
958	2.91e-08	CTGACAAGGG	TTTGCGGGCGTTTTTGT	GGCTTGTCAG
1881	5.34e-08	CAGCAGTCGC	TTCACGTTCGCTCGCGT	ATCGGTGATT
141	1.01e-07	TGCTGATGGT	CTGCCGTTCGATCTGGT	AGACCATCGC

Motif CDAACCGCTTT

Start	P-value		Site
170	4.89e-07	ACCATCGCGG	CGAACCGCTTT	CGATCACCAT
611	1.22e-06	GCCGGGTTCT	CAATCCGCTTT	GCACACTCCA
1403	1.38e-06	GGTTGGACCT	CAAACCCCTTT	GAGCGTGGCA
117	1.54e-06	CAATCTCTAC	CTAACCGCCTT	CGATGCTGAT
1343	3.40e-06	TTCTTGTCTA	CTAATCGATTT	TTCAGACGAT

The result of BLAST

Download

subject_id	identity	aln_length	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000135	100.0	2156	0	1	2156	1	2156	0.0	3982
pORI00000135	100.0	43	0	1028	1070	984	1026	1.25e-15	81
pORI00000135	100.0	43	0	984	1026	1028	1070	1.25e-15	81
pORI00000136	98.98	2156	1	1	2156	1	2134	0.0	3840