DoriC

RefSeq

NC_001995

DoriC accession number

pORI00000090

OriC length

865 nt

OriC AT content

0.6382

The location of oriC region

1456..769 nt

Browse in NCBI

OriC map

OriC sequences

ACTTGTATGATCAAGAAGAAATTCCTACTGTACAAAATGAACAGTAGGAAAATGAATGGACTAGGGTTACCTAGTCCATTTTTATATATAACTTTGGATCTACTGTTCACACTCGCAGAACAAAGTTATATAAGGTCAAAACCAACCCACCTTAAATGGCACAATTGTAAAATAATTGCTTTTTGACTTCACGATATCGCTTTAATGATTTGGATTGGTTGTTAAGTTGGAATTAATCCAACTTAAAACCTGCACCAATCGCCACTGAAGTGGCTATCATTTTTGCTTTGCTCGTCAAAAAATTTCTCATTTCACAATTGTGCCATTTTGGTTTGGCAAGCACTGGCTTTGCTAGCCACTCAATCGCTATCGCTCATTCGTGACTGCTCGCCTGCTTGTTGGGGGCAAGCCCCCAAAACCCCCTACAAAATGCTAGCCATATATCAAAAAATAAACGTAAGCATAAACGCATTCACTTCTTTTCTATATAAATATGAACGAAGTGAATAAGCGTCGGAATAGCAGCAAAAAGTTTCCTTTTTGCTGTTGGAGCATGGGGGTTCAGGGGGTGCAGTATCTGACGTCAATGCCGAGCGATAGCGAGCCAAAGGGTAGCATTTACGTTAGATAACCCCCTGATATGCTCCGACGCTTTATATAGAAAAGAAGATTCAATTAGCTAAAATCTTAATATAAGTTGATATAACAATGTTTATAAGGAATTTTGATGTAGTACTTTTCTTCCTGTTTTGTAGTAGTTTTCTACTACATACCCCTTGTTTTGAAACTTTTTTTTACTCAATATGTTGTATTTTTTTTACAACTTATGTATTATTGAGACATAAAATATAAGTGAGGTGTAATA

AT-rich region

The information of repeat sequences

Motif GCDAGCCA

Start	P-value		Site
600	3.38e-06	CCGAGCGATA	GCGAGCCA	AAGGGTAGCA
432	9.60e-06	CCTACAAAAT	GCTAGCCA	TATATCAAAA
351	9.60e-06	CACTGGCTTT	GCTAGCCA	CTCAATCGCT
405	4.39e-05	CTTGTTGGGG	GCAAGCCC	CCAAAACCCC
590	6.66e-05	GACGTCAATG	CCGAGCGA	TAGCGAGCCA

Motif GGGGGT

Start	P-value		Site
565	5.86e-05	TGGGGGTTCA	GGGGGT	GCAGTATCTG
556	5.86e-05	GTTGGAGCAT	GGGGGT	TCAGGGGGTG

Motif CAMTCGC

Start	P-value		Site
110	2.07e-05	CTACTGTTCA	CACTCGC	AGAACAAAGT
361	5.57e-05	GCTAGCCACT	CAATCGC	TATCGCTCAT
256	5.57e-05	AAACCTGCAC	CAATCGC	CACTGAAGTG
341	7.58e-05	GTTTGGCAAG	CACTGGC	TTTGCTAGCC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000090	100.0	865	0	0	1	865	1	865	0.0	1598
pORI00000247	87.627	687	54	16	205	865	291	972	0.0	769
pORI00000247	100.0	29	0	0	22	50	50	22	3e-08	55