DoriC

RefSeq

NC_001994

DoriC accession number

pORI00000247

OriC length

972 nt

OriC AT content

0.6317

The location of oriC region

1562..875 nt

Browse in NCBI

OriC map

OriC sequences

ACTTGTACACTCATGAAGAAATTCCTACTGTTCATTTTGTACAGTAGGAAAATGAATGGACTAGATAACCCTAGTCCATTTTTTATATATAGCTTTGGATCTACTCGCTTACACTCGCAGAACAAAGCTATACACAAAACAACATCATAATTCAATCGTTTATACACAAAAAGTACTTGTGAACAATGAACAACACTGGGGGGTCGTAGTACCCCAGTGTTGCAAAAAAACAAATCCCACCTTAATTTTGCTTTATTCCAATTTCCATTTTGAGCAGAAACTTTACTCATATGATTTGGATTGGTTGTTAAGTTGGAATTAATCCAACTTAAAACCGGCACCAATCGCCACTGAAGTGGCTATCATATTCGCCTTTCTTTCTCAAAATGTTTTCTCGGCATAAATGCTAAATAAAGGTTTGGCAAGCACTGGCTTTGCTAGCCACATCATTCGCTTATGCTCATTCGTGGCTGCACGCCTGCTTGTTGGGGGTACGCCCCCAATCCCCCTACAAAATGCTAGCCATAAAACTAAAAATAATCGTAAGCATAAACGCATTCACTTCTTTTCTATATAAATATGAACGAAGTGAATAAGCGTCGGAAAGCGGCAAAAAGTTTCCTTTTTGCCGTTGGAGCATGGGGGTTCAGGGGGAATGAGCGTTAGCGAATGTTTCAGAGGCTCCATGTCAATGCCGAGCGATAGCGAGCCGAAGGGTAGCATTTATATGGAGAAGAACCCCCTGATATGCTCCGACGCTTTATATAGAAAAGAAGATTCAACTACTTAAATTCTTAATATAGATTGATATAACAAGGTTTATAAAGAATTTTGATGTAGTACTTTTCTACCTGTTTTGTAGTAGTTTTCTACTACATACCCCTTATTTTGAAACTTTTTTTTACTTAATATGTTGTAATTTTTTTACATATTGTGTATTATTGAGACATAAAATATAAGTGAGGTGTAATA

AT-rich region

The information of repeat sequences

Motif TGGGGG

Start	P-value		Site
640	5.86e-05	CGTTGGAGCA	TGGGGG	TTCAGGGGGA
487	5.86e-05	GCCTGCTTGT	TGGGGG	TACGCCCCCA
197	5.86e-05	TGAACAACAC	TGGGGG	GTCGTAGTAC
649	1.16e-04	ATGGGGGTTC	AGGGGG	AATGAGCGTT

Motif GAGCGWTAGCGA

Start	P-value		Site
697	4.06e-08	TGTCAATGCC	GAGCGATAGCGA	GCCGAAGGGT
658	4.06e-08	CAGGGGGAAT	GAGCGTTAGCGA	ATGTTTCAGA

Motif CGSCMCCAATCSCC

Start	P-value		Site
495	1.29e-09	GTTGGGGGTA	CGCCCCCAATCCCC	CTACAAAATG
336	1.78e-09	AACTTAAAAC	CGGCACCAATCGCC	ACTGAAGTGG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000247	100.0	972	0	0	1	972	1	972	0.0	1796
pORI00000090	87.627	687	54	16	291	972	205	865	0.0	769
pORI00000090	100.0	29	0	0	22	50	50	22	3.39e-08	55