DoriC

RefSeq

NC_000937

DoriC accession number

pORI00000350

OriC length

646 nt

OriC AT content

0.6563

The location of oriC region

1262..1907 nt

Browse in NCBI

OriC map

OriC sequences

AATCAGCTTCTCGAAAGAGAGGCTTTTTTCAATCGGTATAGACACCCTTTAAAAAACCTCAAAATTCGTGCGTGACGTAAGGAAATACCTTGTCGTGGCTCTCCTCTAGCCCATATTAGGGGCGGGGGTCAATTTTAGACATCATATAGGGTAATTATACCACCCCTTATTTAAAATCGTGCTACGGGCTTGCTAGAGGGGTTTTAGGGTATTTATTCCAACATTTTCTAACCAAATGACAACCAAATGGCAACCAAATGACAACCAAATGGTAACCCAATATAAGTAAAGATAATATAAGTAAAGATAATTTAATTAAATCTAACAGTAGAGAGAAGGTGAAGATTTTAACACTCTCAAATTTGAGTTGGTTCCCACGTTTCAAAATTTCGTTAGGTTATATTTGATACTAATTATCAAGATGGATTTAGACGTGAGAGAAAAATTAATAGAGAGACAGGGGAAATTATCAGTGGTGTTGACGAACTATAAAGATTTTTTTTGATAAATAATTTTAGACAAGAGCGAAGCGAATTTTAACAGACACGCTTGACGGAAAAAAAAGTACAGTTTCACGTGAGTGATCTGTACTTTAAAAGGCGTCTATAAAATTTTATAGGCGCCTTTTTTCGTAATTTTTTAATTA

AT-rich region

The information of repeat sequences

Motif CAACCAAATG

Start	P-value		Site
262	1.11e-06	AACCAAATGA	CAACCAAATG	GTAACCCAAT
251	1.11e-06	AACCAAATGG	CAACCAAATG	ACAACCAAAT
240	1.11e-06	AACCAAATGA	CAACCAAATG	GCAACCAAAT
229	3.30e-06	CAACATTTTC	TAACCAAATG	ACAACCAAAT

Motif CDTGCTWGASG

Start	P-value		Site
67	3.73e-07	CCTCAAAATT	CGTGCGTGACG	TAAGGAAATA
189	1.63e-06	GTGCTACGGG	CTTGCTAGAGG	GGTTTTAGGG
545	2.41e-06	TTTTAACAGA	CACGCTTGACG	GAAAAAAAAG
178	2.41e-06	TATTTAAAAT	CGTGCTACGGG	CTTGCTAGAG

Motif GGGTMWTTWTTMSAMMWYWT

Start	P-value		Site
207	5.32e-09	AGGGGTTTTA	GGGTATTTATTCCAACATTT	TCTAACCAAA
149	9.38e-09	ACATCATATA	GGGTAATTATACCACCCCTT	ATTTAAAATC
126	2.39e-08	TTAGGGGCGG	GGGTCAATTTTAGACATCAT	ATAGGGTAAT
97	6.04e-08	ACCTTGTCGT	GGCTCTCCTCTAGCCCATAT	TAGGGGCGGG
620	7.05e-08	AATTTTATAG	GCGCCTTTTTTCGTAATTTT	TTAATTA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000350	100.0	646	0	0	1	646	1	646	0.0	1194
pORI00000107	91.304	69	6	0	252	320	637	705	1.31e-20	95
pORI00000107	81.481	81	8	4	226	306	633	706	4.8e-10	60