DoriC

RefSeq

NC_016605.1

Accession number

NC_016605.1

DoriC accession number

ORI95010949

OriC length

180 nt

OriC AT content

0.722222

The location of oriC region

2095..2274 nt

Browse in NCBI

OriC map

OriC sequences

dnaATTTGTGGATAAATGTTAATAACTACTAAAAGTTATCCACAAGTTATCCACAAGGATTTTCCATTAGTATCAAGGGTTCAATAGAGTTTTCCACAGAATCCACAGCCCTTATTACTACTATTATCTTTATATATATAATTAATATAAATAAAAAGCACCTAACACAAAGGAGTTTTCAATAdnaN

dnaaTTTGTGGATAAATGTTAATAACTACTAAAAGTTATCCACAAGTTATCCACAAGGATTTTCCATTAGTATCAAGGGTTCAATAGAGTTTTCCACAGAATCCACAGCCCTTATTACTACTATTATCTTTATATATATAATTAATATAAATAAAAAGCACCTAACACAAAGGAGTTTTCAATAdnan

dnaATTTGTGGATAAATGTTAATAACTACTAAAAGTTATCCACAAGTTATCCACAAGGATTTTCCATTAGTATCAAGGGTTCAATAGAGTTTTCCACAGAATCCACAGCCCTTATTACTACTATTATCTTTATATATATAATTAATATAAATAAAAAGCACCTAACACAAAGGAGTTTTCAATAdnaN

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif RAGTTWTCCAY

Start	P-value		Site
83	1.12e-07	GGGTTCAATA	GAGTTTTCCAC	AGAATCCACA
40	1.86e-06	AGTTATCCAC	AAGTTATCCAC	AAGGATTTTC
29	1.86e-06	TAACTACTAA	AAGTTATCCAC	AAGTTATCCA
169	6.36e-06	TAACACAAAG	GAGTTTTCAAT	A
53	9.19e-06	TTATCCACAA	GGATTTTCCAT	TAGTATCAAG

Motif GWATCMASRGYYC

Start	P-value		Site
95	3.37e-08	GTTTTCCACA	GAATCCACAGCCC	TTATTACTAC
66	6.39e-08	TTTTCCATTA	GTATCAAGGGTTC	AATAGAGTTT

Motif ACTACT

Start	P-value		Site
113	4.64e-04	AGCCCTTATT	ACTACT	ATTATCTTTA
21	4.64e-04	AATGTTAATA	ACTACT	AAAAGTTATC

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI95010949	100.0	180	0	0	1	180	1	180	0.0	333
ORI94010902	100.0	28	0	0	28	55	271	298	2.67e-08	53