DoriC

RefSeq

NC_010612.1

Accession number

NC_010612.1

DoriC accession number

ORI92310402

OriC length

540 nt

OriC AT content

0.448148

The location of oriC region

1534..2073 nt

Browse in NCBI

OriC map

OriC sequences

dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTCCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCCTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGTTTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTCCACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTAGGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGCTTTACGGATTTTGAACTCATTGTTAGGTGAAGGGACGCAdnaN

dnaaTCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTCCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCCTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGTTTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTCCACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTAGGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGCTTTACGGATTTTGAACTCATTGTTAGGTGAAGGGACGCAdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif RCTCHTGTAATTWCBGNHHTDRAGHTCW

Start	P-value		Site
105	2.96e-11	GGCTGCAGAC	ATTCATGTAATTTCCGGACTGGAGTGCA	CACCGCCCGT
11	9.82e-11	TCCGCGGCCA	GCTCCAGTAATTTCTGCAAAAAACTTCT	CTCACGTTAG
493	2.75e-10	GGCAAAGTCG	GCTCATGGCTTTACGGATTTTGAACTCA	TTGTTAGGTG
246	4.54e-10	CCCAGAATTA	ACACCCCTTATTACTGTTATTGAGATCT	CTTCGATGTT
369	1.32e-09	CACTGACAGC	GAGCTTTCAAGTTCGGGCTTGAAGCTCT	ACGGTTGGTG

Motif TSTTWGRWGWA

Start	P-value		Site
522	2.40e-07	TTGAACTCAT	TGTTAGGTGAA	GGGACGCA
427	7.67e-07	GTTGCGGACG	TCTTAGGTGTA	ACTACACGCC
287	2.71e-06	CGATGTTTGT	TCTTTGAAGAA	CAGCGTTGGG

Motif CGTYRSKGACR

Start	P-value		Site
356	1.39e-06	GCTGACTTGT	CGTCACTGACA	GCGAGCTTTC
301	4.37e-06	TGAAGAACAG	CGTTGGGGACA	TCCGCTCCAC
416	5.93e-06	GTTCGACTGT	CGTTGCGGACG	TCTTAGGTGT
43	7.72e-06	ACTTCTCTCA	CGTTAGTCACA	CGAGTTACAC
444	1.91e-05	TGTAACTACA	CGCCACTGACG	TACGAAGCGG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI92310402	100.0	540	0	0	1	540	1	540	0.0	998
ORI60010254	97.778	540	10	2	1	540	1	538	0.0	929