DoriC

RefSeq

NC_008611.1

Accession number

NC_008611.1

DoriC accession number

ORI60010254

OriC length

538 nt

OriC AT content

0.45539

The location of oriC region

1534..2071 nt

Browse in NCBI

OriC map

OriC sequences

dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCAGCTGTCCCCAGAATTAACACCCCTTATTATTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGTCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTGGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN

dnaaTCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCAGCTGTCCCCAGAATTAACACCCCTTATTATTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGTCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTGGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif RCTCHTGTAATTWYBGGHHTDRAGHTCWC

Start	P-value		Site
491	6.88e-12	GGCAAAGTCG	GCTCATGGATTTACGGGTTTTGAACTCAC	TGTTAGGTGA
104	1.23e-11	CGCTGCAGAC	ATTCATGTAATTTTCGGACTGGAGTGCAC	ACCGCCCGTC
11	6.29e-11	TCCGCGGCCA	GCTCCAGTAATTTCTGCAAAAAACTTCTC	TCACGTTAGT
245	3.86e-10	CCCAGAATTA	ACACCCCTTATTATTGTTATTGAGATCTC	TTCGATGATT
368	9.51e-10	CACTGACAGC	GAGCTTTCAAGTTCGGGCTTGAAGCTCTA	CGGTTGGTGT

Motif CAGHCCCAVCDGBC

Start	P-value		Site
464	4.34e-07	ACGAAGCGGT	CAGTCCCACCTGCC	GGCGGCAAAG
194	4.34e-07	GCGTGATCCA	CAGCCCCACCGGTC	CTCTAGCTGC
221	8.65e-07	TAGCTGCGTC	AAGACCCAGCTGTC	CCCAGAATTA
144	1.46e-06	CCGCCCGTCC	CATCCCCAACAGGC	CAACACAGAC
163	2.53e-06	CAGGCCAACA	CAGACCACACAGCC	ACCCGCAGCG

Motif CGTYRSKGACR

Start	P-value		Site
355	2.04e-06	GCTGACTTGT	CGTCACTGACA	GCGAGCTTTC
300	3.81e-06	TGAAGAACAG	CGTTGGGGACA	TCCGCTACAC
415	5.75e-06	GTTCGACTGT	CGTTGCGGACG	TCTTGGTGTA
43	8.86e-06	ACTTCTCTCA	CGTTAGTCACA	CGAGTTACAC
442	2.01e-05	TGTAACTACA	CGCCACTGACG	TACGAAGCGG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI60010254	100.0	538	0	0	1	538	1	538	0.0	994
ORI92310402	97.778	540	10	2	1	538	1	540	0.0	929