RefSeq NC_008024.1
Accession number NC_008024.1
DoriC accession number ORI20010200
OriC length 154 nt
OriC AT content 0.707792
The location of oriC region 1558..1711 nt
Browse in NCBI
OriC map
OriC sequences
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaaCATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnan
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACATGTTGTGAACAACCATTTAGTCTTGCATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif GTTATSMAC

StartP-valueSite
866.03e-06TTTATTTAGAGTTATCCACTATATACACA
316.03e-06TTATGAAATAGTTATCCACATGTTGTGAA
421.98e-05TTATCCACATGTTGTGAACAACCATTTAG

Motif SAMAAGA

StartP-valueSite
1017.39e-05CCACTATATACACAAGACCTACTACTA
71.29e-04CATGTGGAAAAGAATATCTTTTA

Motif GMRTTCTC

StartP-valueSite
1471.18e-05TTAAATAAAGGAGTTCTC
652.32e-05ATTTAGTCTTGCATTCTCTCGTTTATTT
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI20010200 100.0 154 0 0 1 154 1 154 0.0 285
ORI96010171 98.701 154 2 0 1 154 1 154 0.0 274
ORI92710450 98.701 154 2 0 1 154 1 154 0.0 274
ORI90010283 98.701 154 2 0 1 154 1 154 0.0 274
ORI20010198 98.701 154 2 0 1 154 1 154 0.0 274
ORI20010196 98.701 154 2 0 1 154 1 154 0.0 274
ORI20010194 98.701 154 2 0 1 154 1 154 0.0 274
ORI10010148 98.701 154 2 0 1 154 1 154 0.0 274
ORI10010113 98.701 154 2 0 1 154 1 154 0.0 274
ORI10010069 98.701 154 2 0 1 154 1 154 0.0 274
ORI96010337 98.052 154 3 0 1 154 1 154 0.0 268
ORI10010150 98.052 154 3 0 1 154 1 154 0.0 268
ORI10010014 98.052 154 3 0 1 154 1 154 0.0 268
ORI10010057 96.753 154 2 1 1 154 1 151 0.0 254