RefSeq NC_003485.1
Accession number NC_003485.1
DoriC accession number ORI10010057
OriC length 151 nt
OriC AT content 0.708609
The location of oriC region 1558..1708 nt
Browse in NCBI
OriC map
OriC sequences
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaaCATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnan
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACAACCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif AGTTATSMAC

StartP-valueSite
851.59e-06GTTTATTTAGAGTTATCCACTATATACACA
301.59e-06TTTATGAAATAGTTATCCACAAGTTGTGAA
416.65e-06GTTATCCACAAGTTGTGAACAACCATTTAG

Motif GRRTTCTC

StartP-valueSite
1441.87e-05TTAAATAAAGGAGTTCTC
651.87e-05ATTTAGTCTTGGATTCTCTCGTTTATTT

Motif SAMAAGA

StartP-valueSite
1018.11e-05CCACTATATACACAAGACCTACTACTA
71.51e-04CATGTGGAAAAGAATATCTTTTA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI10010057 100.0 151 0 0 1 151 1 151 0.0 279
ORI96010171 98.052 154 0 1 1 151 1 154 0.0 265
ORI92710450 98.052 154 0 1 1 151 1 154 0.0 265
ORI90010283 98.052 154 0 1 1 151 1 154 0.0 265
ORI20010198 98.052 154 0 1 1 151 1 154 0.0 265
ORI20010196 98.052 154 0 1 1 151 1 154 0.0 265
ORI20010194 98.052 154 0 1 1 151 1 154 0.0 265
ORI10010148 98.052 154 0 1 1 151 1 154 0.0 265
ORI10010113 98.052 154 0 1 1 151 1 154 0.0 265
ORI10010069 98.052 154 0 1 1 151 1 154 0.0 265
ORI96010337 97.403 154 1 1 1 151 1 154 0.0 259
ORI10010150 97.403 154 1 1 1 151 1 154 0.0 259
ORI10010014 97.403 154 1 1 1 151 1 154 0.0 259
ORI20010200 96.753 154 2 1 1 151 1 154 0.0 254