DoriC

RefSeq

GCF_000026445.2

Accession number

NC_020133.1

DoriC accession number

ORI97227661

OriC length

539 nt

OriC AT content

0.44898

The location of oriC region

1534..2072 nt

Browse in NCBI

OriC map

OriC sequences

dnaATCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnaN

dnaaTCCGCGGCCAGCTCCAGTAATTTCTGCAAAAAACTTCTCTCACGTTAGTCACACGAGTTACACGACGCCGGTGTGTGTAGTCCTGTGCACAAACGGCTGCAGACATTCATGTAATTTTCGGACTGGAGTGCACACCGCCCGTCCCATCCCCAACAGGCCAACACAGACCACACAGCCACCCGCAGCGTGATCCACAGCCCCACCGGTCCTCTAGCTGCGTCAAGACCCGGCTGTCCCCAGAATTAACACCCCTTATTACTGTTATTGAGATCTCTTCGATGATTGTTCTTTGAAGAACAGCGTTGGGGACATCCGCTACACAGCGCCGCATCGCAGCGCGTGTCGGCTGACTTGTCGTCACTGACAGCGAGCTTTCAAGTTCGGGCTTGAAGCTCTACGGTTGGTGTTCGACTGTCGTTGCGGACGTCTTCGTGTAACTACACGCCACTGACGTACGAAGCGGTCAGTCCCACCTGCCGGCGGCAAAGTCGGCTCATGGATTTACGGGTTTTGAACTCACTGTTAGGTGAAGGGACGCAdnan

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif RCTCHTGTAATTWCBGGHHTDRAGHTCWC

Start	P-value		Site
492	5.04e-12	GGCAAAGTCG	GCTCATGGATTTACGGGTTTTGAACTCAC	TGTTAGGTGA
105	2.80e-11	GGCTGCAGAC	ATTCATGTAATTTTCGGACTGGAGTGCAC	ACCGCCCGTC
11	3.38e-11	TCCGCGGCCA	GCTCCAGTAATTTCTGCAAAAAACTTCTC	TCACGTTAGT
246	2.24e-10	CCCAGAATTA	ACACCCCTTATTACTGTTATTGAGATCTC	TTCGATGATT
369	6.93e-10	CACTGACAGC	GAGCTTTCAAGTTCGGGCTTGAAGCTCTA	CGGTTGGTGT

Motif ACACAG

Start	P-value		Site
318	2.32e-04	GACATCCGCT	ACACAG	CGCCGCATCG
170	2.32e-04	AACACAGACC	ACACAG	CCACCCGCAG
161	2.32e-04	CAACAGGCCA	ACACAG	ACCACACAGC

Motif WCGDSTDACWHSWCGYCRSTGW

Start	P-value		Site
430	1.00e-11	GCGGACGTCT	TCGTGTAACTACACGCCACTGA	CGTACGAAGC
343	1.70e-10	GCAGCGCGTG	TCGGCTGACTTGTCGTCACTGA	CAGCGAGCTT
53	5.12e-10	CGTTAGTCAC	ACGAGTTACACGACGCCGGTGT	GTGTAGTCCT

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
ORI60010254	99.072	539	4	1	1	539	1	538	0.0	966
ORI92310402	98.333	540	8	1	1	539	1	540	0.0	946