DoriC

RefSeq

NZ_CP024845.1

DoriC accession number

aORI10010320

OriC length

630 nt

OriC AT content

0.5016

The location of oriC region

1908403..1909032 nt

Browse in NCBI

OriC map

OriC sequences

TGAATATCACACAGTGTGAGTGGGGGGAGTATAAATCTAGTGGAGAACGCCACCCCACGTTTCCGACGTTCCTTGTCCGATATCAGTGGGAAAAAGCCGTAATACGGTAGTATTGTATTTCTGATAATATAACCGCGTTTCCGACGTGAGATAGGAAACCCGTAGACGGAAGCGTCGCCTCGATGTCGAATCCCGAACCCACACACCCCACGTTTCCGTCGTAATCACTGAATAGGTGGGGTGGGGACTCGAAGAAGACGTGCACGACGAGATACCAAAGACGAGAGCCGCCTAGCCGTCCAAAGTTGGCCGTCTATAGAAGCAGCTGGAAAGGATTGTTTCATCTGAGGGGGCGAAGTACTTCGTCCCCTCCTTGGTCGAAGCACACTTAATGGACATTTCTCAGCTTTGCTAGTTTAATCTATGTGTTCCAGAAGTTAGTTCACCTCTAGATTGGTTCTAGGTCAACATAATTAGTAGCTGCATAGCACTATCATAGCCTCTCCCTACGCCGTCGTGGAGAAACGACGGAAACGCGGGGGGTGTGATCCAATCGAAAACAGTGTCACCCCCTTCACCCACATCCAGTTACGACGGAAACGTGGGGTGGGTGTCCTCCATCATCGAATT

ORB AT-rich region

The information of repeat sequences

Motif CCVCKTYTCCGWCGT

Start	P-value		Site
55	1.56e-09	GAACGCCACC	CCACGTTTCCGACGT	TCCTTGTCCG
208	5.20e-09	CCCACACACC	CCACGTTTCCGTCGT	AATCACTGAA
133	1.11e-08	GATAATATAA	CCGCGTTTCCGACGT	GAGATAGGAA
570	5.16e-07	ACAGTGTCAC	CCCCTTCACCCACAT	CCAGTTACGA
504	6.08e-07	TCATAGCCTC	TCCCTACGCCGTCGT	GGAGAAACGA

Motif GTGGGGKGDGT

Start	P-value		Site
602	2.46e-07	CGACGGAAAC	GTGGGGTGGGT	GTCCTCCATC
20	1.51e-06	CACAGTGTGA	GTGGGGGGAGT	ATAAATCTAG
236	2.30e-06	CACTGAATAG	GTGGGGTGGGG	ACTCGAAGAA
536	3.59e-06	CGACGGAAAC	GCGGGGGGTGT	GATCCAATCG

Motif TWGTTTMATCT

Start	P-value		Site
336	1.70e-07	CTGGAAAGGA	TTGTTTCATCT	GAGGGGGCGA
413	7.41e-07	TCAGCTTTGC	TAGTTTAATCT	ATGTGTTCCA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
aORI10010320	100.0	630	0	0	1	630	1	630	1164
aORI10010140	98.567	628	5	3	1	628	1	624	1107
aORI10010140	100.0	106	0	0	525	630	591	696	196