DoriC

RefSeq

NC_017459.1

DoriC accession number

aORI10010120

OriC length

947 nt

OriC AT content

0.5829

The location of oriC region

3147809..722 nt

Browse in NCBI

OriC map

OriC sequences

CCTGTCCTCCCACGCCTCTTGAGTGGTACCAACTGTCCCGAAGTGGCGTATGGCGGTATCACGTTGTTGTGGTCACTTAAAACCGCGTCAGACATCAACATATAATATGACATCTAAGGATTCCCCGCTCAAAATTATATCTAGCATCTGGCATCTTAGGTCTAGCCTTGATGAATATAGTGGATAGCACTATTGCACTTGTTTTTACAGGTAATTGATATTAACAAATCGGTTTCGATTGATAATATCCGCTTGATACTCGGTTATGCCGTGTGCCCCCCACCCCTCTGTTTCAGGTGGAGATGCTAAGAAGAGTGTGCGGTTACTGATCAGTCGAGATATTGTGACAATCTTCTAACTCTTTATACTTAATTACAACATAATATACGACGTACACAACTACTAAGTTGCAGTACGGGTATTGTTATATAGTATATTATATAAAGTTTTGCCCATTAGTACTGTATATAATCGAACACCCACCCCCTTGTGATTACAGTTCCAGTTGAAACAAAGGGGTTGGGGGGTATTGTATTTGATACAGCGAACAGAAGATGCCACTATCATTCCTAAGTGATGATCCCGCTGACCGGTTGGATGGATACATCATATCGATTATCTGAGTATCTTAAGGATCTGTCAGACCAAACTTGCGTTCAACAGGTAGGCGTATCATTGTGACATATTCACTCGACTATCGACTATCGACTGTGTTGGTTTGTTGCATCTTATACCTCACAGGGATGTTAGGATGGTCGTAACTACAAGAGATAGATTTTTGTATCGTGCACTCATCGATTTCCATTGCATCAATTGTATATCGGTCTAATTGATCAGAGCAATATATTGACCGTTTCAATACCTAAACCCGCCTCATTTGGACGCTGTCATTGGAATTTCCACCTGAAATCAAGGGGATGTAGACGGGTGGACGGGGGAATTACCAA

ORB AT-rich region

The information of repeat sequences

Motif CHCCCACSCC

Start	P-value		Site
277	1.91e-07	TGCCGTGTGC	CCCCCACCCC	TCTGTTTCAG
477	4.42e-07	TATAATCGAA	CACCCACCCC	CTTGTGATTA
7	1.46e-06	CCTGTC	CTCCCACGCC	TCTTGAGTGG

Motif MAKKTSSASHTGMWAHVAAGRGKDTGBRG

Start	P-value		Site
497	4.24e-16	CTTGTGATTA	CAGTTCCAGTTGAAACAAAGGGGTTGGGG	GGTATTGTAT
895	3.52e-13	CTGTCATTGG	AATTTCCACCTGAAATCAAGGGGATGTAG	ACGGGTGGAC
294	6.77e-13	CCCTCTGTTT	CAGGTGGAGATGCTAAGAAGAGTGTGCGG	TTACTGATCA

Motif ACYTAAAMCCGCSTCA

Start	P-value		Site
861	2.06e-10	CCGTTTCAAT	ACCTAAACCCGCCTCA	TTTGGACGCT
75	1.19e-09	TGTTGTGGTC	ACTTAAAACCGCGTCA	GACATCAACA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010120	100.0	947	0	0	1	947	1	947	0.0	1749
aORI10010130	97.36	947	25	0	1	947	1	947	0.0	1611