DoriC

RefSeq

NC_015948.1

DoriC accession number

aORI10010184

OriC length

618 nt

OriC AT content

0.5081

The location of oriC region

1802387..1803004 nt

Browse in NCBI

OriC map

OriC sequences

CGTACGCCACCTTTTGAGTGACTCTATATAAAACCAGTGACCACCGTACAAGTGTTTCAAGTGTTTTCACGCCGAACAGTCACACACCACCCTGCAAGTGTTTCTTCGATCCCTCTGGAAAACAGCCACGAGCAGTCTGCTGCACCGACCCTTCATCTAGAACACTTGAGTCCTGCGATTCTCGACTGTCTCGTTCTGGACCGTATCTAGAACTAGTAGCACTATTATATATTTTATGGTAAAGGCAATAAAATCATATTCACCATCGAACGTCCACCTCCATAGAATTCAAGCTACAAGTGCTTCAGAGCACTCATATCTGCATATACGAATAGTCTTCTGATCATGTACTCTCAGTAGAATCGAACAATCTGCCATTTCTTTAAGTATGCAGAGGGAGCCTCCCCCTCCCCACCCCCACCCCTGGAAACACCGAGAACACTTGCAGGGTGGTGTGTGTGGGTCCCGCTTTTCCACCGACATTTCGGTATAAAAGTACTCAGCGTCGATACGGCATGAAACCCCTGCCATAGCGAACGGTTGGTCATATAGCGAGCTAGCCCGTCACCCGCGGCGCACGGCACCGCTCTTTACTTTCTGACAGCCCGTAGACACCGT

ORB AT-rich region

The information of repeat sequences

Motif AAGTGTTT

Start	P-value		Site
96	1.01e-05	ACCACCCTGC	AAGTGTTT	CTTCGATCCC
59	1.01e-05	CAAGTGTTTC	AAGTGTTT	TCACGCCGAA
50	1.01e-05	ACCACCGTAC	AAGTGTTT	CAAGTGTTTT
298	2.19e-05	TTCAAGCTAC	AAGTGCTT	CAGAGCACTC

Motif ATMKAGAACNVKTG

Start	P-value		Site
155	1.43e-08	CCGACCCTTC	ATCTAGAACACTTG	AGTCCTGCGA
432	3.66e-07	CCCTGGAAAC	ACCGAGAACACTTG	CAGGGTGGTG
205	8.01e-07	TCTGGACCGT	ATCTAGAACTAGTA	GCACTATTAT
530	1.16e-06	AACCCCTGCC	ATAGCGAACGGTTG	GTCATATAGC
26	1.39e-06	GAGTGACTCT	ATATAAAACCAGTG	ACCACCGTAC

Motif CGAACAGTCT

Start	P-value		Site
129	1.88e-06	AAAACAGCCA	CGAGCAGTCT	GCTGCACCGA
329	2.78e-06	TCTGCATATA	CGAATAGTCT	TCTGATCATG
73	3.87e-06	GTTTTCACGC	CGAACAGTCA	CACACCACCC
364	5.27e-06	TCAGTAGAAT	CGAACAATCT	GCCATTTCTT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010184	100.0	618	0	0	1	618	1	618	0.0	1142
aORI10010124	87.912	182	22	0	1	182	1	182	0.0	215
aORI10010124	91.549	71	3	3	403	470	400	470	3.65e-21	95