DoriC

RefSeq

NC_006396.1

DoriC accession number

aORI10010124

OriC length

516 nt

OriC AT content

0.5368

The location of oriC region

1130018..1130533 nt

Browse in NCBI

OriC map

OriC sequences

CGTATTCCACCTTTTGAGTGGCTCTATATAAAACCAGTGACCACCGTTCAAGTGTTTCAAGTGTTTTCACGCCGAACAGTCACACACCACCCTGCAAGTGTTTCTCCGCTCCCACTCGAAAACAGTTACGAGCGGCCTGCTACACCGATACCTGACTTAACACACTTGATTCCTGCGATTCTTCATTCTCTAGTCAATGACTAGATATGGAACTAGATATTATTTTTATATCTTATGGTATATGCAATATAGTCTGGTTACTGTTGAATAGCACAGTCTATAGAATCTACTTCGGAAGGGGTCTGTAACGGCTAAATCTATGTATTCAGGTACAGTACCGACCACACAGTCTCGGCGAGACAGAACAATCTCCACTCTATTTAAATATAGTGACGTGGTTCCGCCACTCCCCGCCCCCACCCCCTGCAAACCCCGAGAACACTTGCAGGGTGGTGTGTGTGGGTCCCGCTCTGTCACGAATATTTTGGCAGAAATCTCACTCAATGTCCACACGGC

ORB AT-rich region

The information of repeat sequences

Motif CTATTYAAAWACAGTDACGASC

Start	P-value		Site
377	1.56e-10	AATCTCCACT	CTATTTAAATATAGTGACGTGG	TTCCGCCACT
112	4.46e-10	TTCTCCGCTC	CCACTCGAAAACAGTTACGAGC	GGCCTGCTAC
24	4.46e-10	TTGAGTGGCT	CTATATAAAACCAGTGACCACC	GTTCAAGTGT
322	1.24e-09	CTAAATCTAT	GTATTCAGGTACAGTACCGACC	ACACAGTCTC

Motif TTCAAGTG

Start	P-value		Site
56	1.44e-05	GTTCAAGTGT	TTCAAGTG	TTTTCACGCC
47	1.44e-05	GTGACCACCG	TTCAAGTG	TTTCAAGTGT
93	2.43e-05	CACACCACCC	TGCAAGTG	TTTCTCCGCT
13	7.79e-05	TATTCCACCT	TTTGAGTG	GCTCTATATA

Motif GGRWGGKGTSTG

Start	P-value		Site
448	7.61e-08	AACACTTGCA	GGGTGGTGTGTG	TGGGTCCCGC
294	1.03e-07	AATCTACTTC	GGAAGGGGTCTG	TAACGGCTAA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010124	100.0	516	0	0	1	516	1	516	0.0	953
aORI10010184	87.912	182	22	0	1	182	1	182	0.0	215
aORI10010184	92.537	67	4	1	404	470	405	470	3.03e-21	95