DoriC

RefSeq

NC_013887.1

DoriC accession number

aORI10010091

OriC length

689 nt

OriC AT content

0.807

The location of oriC region

1378410..1379098 nt

Browse in NCBI

OriC map

OriC sequences

GTTTCCACCATAATAATAAATTAATAATTTAAATCTTTAAATTAATTGTCCATATTTTTCCCATTGATTTCGAACTTTTGTTTTAGGAACGTTATATAGGTTTCGAAAAATCGAAAGATAGATTGAATCAACTATTCTTAAATTTTAATACTTTGTTGTAAGTTTATGACCAAATTTTAAAAAATATTGTGAATCAAACAATAAAATTAAAAAATATTATGAATCAAATAATATCTTGTATAAAATAAGAACCTATCATTTTCAGAAATAAACTTGAATAAAAATAAACATAGTATATATACTATTCTAATGAAATAAAGTTAATTTTAATTTTTCTCATGAGAATTATTAAAACACATTAAAAATAAAATATCATGAATCAAAACTTATAATTAGTAAAAAACTATGAATCAAAAATTTTTATTTAATTAACATTATATAAAAACTACCCAACATTAATAAAGAAAAACAATTAACAATTATTAAAGAGAAATAAATAAATAAATGTTCCATCAAAACATACGTAATGACAAAAATCCTCAAAATGTTAGTAATACTGCAACTAAAAATTAAGGGATAAATCTATCTCATGAATCAAAAGGTTTATAAATGATTAAAATAAATATAACTGAGTATGCATAAAACAAACATTATAAAAATAACAACCTCTAATCAAAAAGGTGTGAAAG

ORB AT-rich region

The information of repeat sequences

Motif ATATYATGAATCAAA

Start	P-value		Site
585	1.48e-08	GGATAAATCT	ATCTCATGAATCAAA	AGGTTTATAA
370	4.85e-08	TAAAAATAAA	ATATCATGAATCAAA	ACTTATAATT
184	8.25e-08	ATTTTAAAAA	ATATTGTGAATCAAA	CAATAAAATT
214	2.07e-07	AAATTAAAAA	ATATTATGAATCAAA	TAATATCTTG
401	6.01e-07	AATTAGTAAA	AAACTATGAATCAAA	AATTTTTATT

Motif GRTTTCG

Start	P-value		Site
99	2.41e-06	ACGTTATATA	GGTTTCG	AAAAATCGAA
66	1.59e-05	TTTTCCCATT	GATTTCG	AACTTTTGTT

Motif TTTGTTKTARG

Start	P-value		Site
77	1.54e-07	ATTTCGAACT	TTTGTTTTAGG	AACGTTATAT
152	3.31e-07	ATTTTAATAC	TTTGTTGTAAG	TTTATGACCA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010091	100.0	689	0	0	1	689	1	689	0.0	1273
aORI10010004	78.319	678	113	29	1	662	687	28	0.0	407