DoriC

RefSeq

NC_013407.1

DoriC accession number

aORI10010083

OriC length

674 nt

OriC AT content

0.7774

The location of oriC region

39037..39710 nt

Browse in NCBI

OriC map

OriC sequences

GTTTCCACCTGCATATAATATCTATTCCTATTATTAATTTGAATTTATTATCACCAATTGATCTCTATTCGAAGTTTGTTTTTTATACATATATAGATTTCGAAAGATCGAAAGTGAGTTTTCTAATCGATTAACTTAAATAAATCGTTAATAAAAAAATAAATTAAAAAAACGTGAATTTAATATTATTTCTTACAAAATATCATGAACCTAAGTATATTTATGATTAAAGAAGGCACCAAGATCCCCAGAAACAAACTTTAATAAAAATTAAAATTATATATATACTATTTCTATGAAATAAAGTTAATTTTAATTCTTCTCTTGAGAATACTCAAAAACTCCCAAAATCAAAAAACCGTGAATTTAAAGAAAAAAGATATAAAAAACTATGAATCAAAAGATATTATATATTTAACAAAAACACACAGTAGAAACATATATATAGAAAAAACATAAAATTAACCCAATATTGAAAAAATCATAATACATACTCGCTCTTAGAAAATAAACATTAAATAATGCTTAAAATATTAGTAATACTTTCACGTAGAATCGAGGCGAAAATCCGAGTCGTGAATCATAAAATATATAAATGTAAAATAACATAACAATTGAGTAATTATAGTCAACTGAATACAAAATCAACATACACTATTAAAAAGGTGAAAATC

ORB AT-rich region

The information of repeat sequences

Motif CGAGKCG

Start	P-value		Site
557	5.94e-07	CACGTAGAAT	CGAGGCG	AAAATCCGAG
570	2.58e-06	GGCGAAAATC	CGAGTCG	TGAATCATAA

Motif MGTKARTTT

Start	P-value		Site
113	2.08e-06	AAAGATCGAA	AGTGAGTTT	TCTAATCGAT
360	4.67e-06	ATCAAAAAAC	CGTGAATTT	AAAGAAAAAA
173	4.67e-06	ATTAAAAAAA	CGTGAATTT	AATATTATTT
73	4.01e-05	CTCTATTCGA	AGTTTGTTT	TTTATACATA
305	6.73e-05	TATGAAATAA	AGTTAATTT	TAATTCTTCT

Motif CTYKCWCKTAG

Start	P-value		Site
494	4.99e-08	ATAATACATA	CTCGCTCTTAG	AAAATAAACA
543	2.51e-07	ATTAGTAATA	CTTTCACGTAG	AATCGAGGCG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010083	100.0	674	0	0	1	674	1	674	0.0	1245
aORI10010004	73.469	343	68	22	90	420	586	255	5.13e-25	108