DoriC

RefSeq

NC_000961.1

DoriC accession number

aORI10010007

OriC length

772 nt

OriC AT content

0.693

The location of oriC region

110790..111561 nt

Browse in NCBI

OriC map

OriC sequences

TGGAAATATAACACTAATCGCTATTTAATTTTCTTTTAATAGCACATTAAGACATGAACAGCTTTTGAAATTGGAACGTTATTGTCAAATTTTCCATAGGAAACATTGGAACCATTGGAAAGCAACCTAATTCTCACCTCAACAGTTTTTATCCTTTATTTGACAAATGCATGTCCAAAAAATGAAAAATATCTCATATAATCTTCCAATAGAAGCTACATAATTTTCCAGGAGAAGCAGGGGATGCAATGATCAATGCTGTGCATTTCATGTTTACATTGTAGTATCTTCGATCCGATTTCCTTTGGAAGTTAAATGCACATAAATGTTCATTCAGACATGGACGTTAAGGCATATAAATGAGTATTAAGTTAACTTAATTTGTTTACTAAAATCAGAAATTTAAACAGAAGTGAAGTCCCCCAGGGTTTCATTTCCACTGGAACTCGGGGGAGACACCGAGAGAATATTAATTTTTATTTCTGACAAGACACTCTCCCATACTAGTTGGTTCTCCTATTTAAATATTTTTCTATGAACATAATATAAAAGTAAAGATTATTTTATTAGAAAAATGTTCATTTAGAGTGAACAAATATGTACATTTAATGAACAGTTGTATATTTACAAAAGTAAAGAAATCGGAGTTAAATATTTACTAACATAAAAGAGACTAATTTTTGCTGGGGTATTGTCCTCCCAGTATTCTCCAGTGGAAATGAAACCCTGGGGGTTTTAAAATAATTATCGAAACGGTTAAAAAATAATAAAA

ORB AT-rich region

The information of repeat sequences

Motif TTTCCAKTGGAARY

Start	P-value		Site
434	7.33e-08	CAGGGTTTCA	TTTCCACTGGAACT	CGGGGGAGAC
707	9.95e-08	CTCCCAGTAT	TCTCCAGTGGAAAT	GAAACCCTGG
299	1.75e-07	TTCGATCCGA	TTTCCTTTGGAAGT	TAAATGCACA
225	2.16e-07	GCTACATAAT	TTTCCAGGAGAAGC	AGGGGATGCA
91	2.48e-07	ATTGTCAAAT	TTTCCATAGGAAAC	ATTGGAACCA

Motif CTCCCA

Start	P-value		Site
697	6.21e-05	GGGTATTGTC	CTCCCA	GTATTCTCCA
496	6.21e-05	ACAAGACACT	CTCCCA	TACTAGTTGG
420	9.06e-05	GAAGTGAAGT	CCCCCA	GGGTTTCATT
514	3.61e-04	CTAGTTGGTT	CTCCTA	TTTAAATATT
203	3.61e-04	CTCATATAAT	CTTCCA	ATAGAAGCTA

Motif CTGGGG

Start	P-value		Site
448	1.44e-05	CACTGGAACT	CGGGGG	AGACACCGAG
727	4.46e-05	AAATGAAACC	CTGGGG	GTTTTAAAAT
684	4.46e-05	CTAATTTTTG	CTGGGG	TATTGTCCTC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010007	100.0	772	0	0	1	772	1	772	0.0	1426
aORI10010003	82.47	251	35	8	295	541	301	546	0.0	211