RefSeq NC_017473.1
Accession number NC_017473.1
DoriC accession number ORI96010108
OriC length 170 nt
OriC AT content 0.641176
The location of oriC region 1431..1600 nt
Browse in NCBI
OriC map
OriC sequences
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaaTGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnan
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
dnaATGCACATGTGGATAACCTTCAAAAACAAGCCATTTTATCCGTCGCACTTATCCACAAGTGCATAACTTTCTCAGTTGTTGTTTCTCAAAGTTTTCCACAGTTTGAACACGCCCTATTACTATTACTTCAAAAGCTTTATATTATATATAAAAGACGTTCAGGAGGCTCTTdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif TSCACADKTKSAWMAC

StartP-valueSite
11.19e-09.TGCACATGTGGATAACCTTCAAAAAC
513.94e-09GTCGCACTTATCCACAAGTGCATAACTTTCTCAGTT
943.77e-08CTCAAAGTTTTCCACAGTTTGAACACGCCCTATTAC

Motif GASGYTC

StartP-valueSite
1621.34e-05AGACGTTCAGGAGGCTCTT
1538.81e-05ATATATAAAAGACGTTCAGGAGGCTCT

Motif CTTCAAAARC

StartP-valueSite
1251.42e-06ATTACTATTACTTCAAAAGCTTTATATTAT
174.51e-06TGTGGATAACCTTCAAAAACAAGCCATTTT
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010308 100.0 170 0 0 1 170 1 170 0.0 315
ORI96010110 100.0 170 0 0 1 170 1 170 0.0 315
ORI96010108 100.0 170 0 0 1 170 1 170 0.0 315
ORI92510434 98.837 172 0 1 1 170 1 172 0.0 305
ORI94010712 98.256 172 1 1 1 170 1 172 0.0 300
ORI40010229 98.256 172 1 1 1 170 1 172 0.0 300
ORI96010120 83.626 171 25 2 3 170 3 173 5.16e-40 158
ORI94010702 83.626 171 25 2 3 170 3 173 5.16e-40 158
ORI96010115 83.041 171 26 2 3 170 3 173 2.4e-38 152
ORI93010585 83.041 171 26 2 3 170 3 173 2.4e-38 152