DoriC

RefSeq

NC_019187

DoriC accession number

pORI00000550

OriC length

350 nt

OriC AT content

0.8486

The location of oriC region

1..350 nt

Browse in NCBI

OriC map

OriC sequences

TTTTTTTGTTTTAAAAAAAAAATAGCGAAAGCCTTAATTTTCATCAAGGCTTTCGCTATTTTTTATTATATGTTTATTTATCTTTTTATATAAGATTAAAACACTGTTATTTTGCATTTATATTATAGAAAGCATATATCAAAAAAAACAACATGCATTTAAAAGTTTAATTCCAAAAAAAAACTTTAAAAAAAAATTTTTTTTTAAAGTTTTTTTTTTGAATTAAACTAAATAATATAATTAATGATAAATTTTTAAAAAAAAAATTGAAATAAGTAAATTTTAGAAAAAGAAAATCGTACGCAAAAAAAAACGTATTATTTTAGAAAAACATTTTATGTTTAATTTTT

AT-rich region

The information of repeat sequences

Motif KCKWWMGC

Start	P-value		Site
297	5.57e-07	AAAAAGAAAA	TCGTACGC	AAAAAAAAAC
49	1.15e-06	TTTCATCAAG	GCTTTCGC	TATTTTTTAT
25	2.04e-06	AAAAAAAATA	GCGAAAGC	CTTAATTTTC

Motif GCATWT

Start	P-value		Site
155	1.76e-04	AAAACAACAT	GCATTT	AAAAGTTTAA
114	1.76e-04	CTGTTATTTT	GCATTT	ATATTATAGA
132	3.67e-04	ATTATAGAAA	GCATAT	ATCAAAAAAA

Motif CAYTKT

Start	P-value		Site
102	3.31e-05	AAGATTAAAA	CACTGT	TATTTTGCAT
332	1.27e-03	TTTAGAAAAA	CATTTT	ATGTTTAATT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
pORI00000551	100.0	350	0	0	1	350	1	350	647
pORI00000550	100.0	350	0	0	1	350	1	350	647
pORI00000357	99.143	350	1	2	1	350	1	348	628