DoriC

RefSeq

NC_010096

DoriC accession number

pORI00000420

OriC length

654 nt

OriC AT content

0.5688

The location of oriC region

1..654 nt

Browse in NCBI

OriC map

OriC sequences

CTGCAGAAGTAGTCGCTGATTGGCTAATTCAGCGTATCAAAGACAAAGGCGACCAAAAATAGCTTGAGTTCTTTTAGAACAAAAAAGAAAGACAGTAGTTGCACCTACTGTCTTTCTTTTGCGTTGTGCTTTTAGTTCCTCGAACTTTTAGCGTCAAGCATATTATATCATGGGGCGAGAAATTCTGTCAAAATAATGCTATAATGCTTTTGAGGCACCTCAGCGATACGGTCGGTGGTGTGAATCTCATTTACGTAGGGCGACTGGAAACGGATAGCTCAAAGGGCGCGTTTGAGTGTCGGGTGTGGGACTGCCTTCAGCTTCGGGCTGTAAAGACCCCTGATACTTTTGAATGAGATGACCCTTTGGGGTCTTTTTTGTTTTTTTAGGGAGATGTTGTGGGGGATTTTTTCTCCGAAAAAATCTAAAATATGGGGGGGCTACTACGACCCCCCCTATAGTGCCGAGTGCGAAAATCAAAAAAAAAACGCCTTTAGCCTTAGAGCTGCAAGGGTTTGAGGCTCGTCAAATCTCGGCGACTTTTCGGCGACTTTTCGGCGACTTTTTAGAGATTTTTTGGGAAAAATACGAAAAAGAATGCATTGAGTGCACGGTTATGCTACTATAGTTTTATAAAATTTTGAGAGGTGACGC

AT-rich region

The information of repeat sequences

Motif SGGCGACT

Start	P-value		Site
556	7.38e-06	GGCGACTTTT	CGGCGACT	TTTTAGAGAT
545	7.38e-06	GGCGACTTTT	CGGCGACT	TTTCGGCGAC
534	7.38e-06	CGTCAAATCT	CGGCGACT	TTTCGGCGAC
258	1.78e-05	CATTTACGTA	GGGCGACT	GGAAACGGAT
438	3.89e-05	AAATATGGGG	GGGCTACT	ACGACCCCCC

Motif CYTWTAGYKBCDAG

Start	P-value		Site
145	9.03e-08	GTTCCTCGAA	CTTTTAGCGTCAAG	CATATTATAT
455	3.79e-07	TACGACCCCC	CCTATAGTGCCGAG	TGCGAAAATC
314	8.70e-07	TGTGGGACTG	CCTTCAGCTTCGGG	CTGTAAAGAC
499	1.38e-06	CGCCTTTAGC	CTTAGAGCTGCAAG	GGTTTGAGGC
129	1.47e-06	TTGCGTTGTG	CTTTTAGTTCCTCG	AACTTTTAGC

Motif GAGHTTTTBTVVRAMAAADDCKAAAAW

Start	P-value		Site
569	6.27e-13	CGACTTTTTA	GAGATTTTTTGGGAAAAATACGAAAAA	GAATGCATTG
405	4.21e-11	TGTTGTGGGG	GATTTTTTCTCCGAAAAAATCTAAAAT	ATGGGGGGGC
66	3.23e-10	AAAATAGCTT	GAGTTCTTTTAGAACAAAAAAGAAAGA	CAGTAGTTGC
179	1.58e-09	CATGGGGCGA	GAAATTCTGTCAAAATAATGCTATAAT	GCTTTTGAGG
30	1.75e-09	TTGGCTAATT	CAGCGTATCAAAGACAAAGGCGACCAA	AAATAGCTTG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000420	100.0	654	0	0	1	654	1	654	0.0	1208
pORI00000351	99.694	654	2	0	1	654	1	654	0.0	1197