RefSeq NC_004839
DoriC accession number pORI00000214
OriC length 826 nt
OriC AT content 0.5133
The location of oriC region 2601..3426 nt
Browse in NCBI
OriC map
OriC sequences
CGTCGTATTTACTGAAAATCCGGTTAGCGCCGGAGGATTTCGCTCGTCTGCCTCCTGTCAGTGCTTGTTATTTGAGCGATGTGACGGCCGCTACATGACCTATCTTCTCTTTCCCGCCCTGAAAATGCCCTCGAATTCTCCCAATATCGTCGCTTGAATGTACTGATTTAGGTTATCCACAGTTAACTGCAAGGGAACTTCCCATAAAGTTACAACCGATATGTTTTTTAAGCGCCAGCCGAACTTGTTTTAAAGTGCGTGGTTTCTTTTAAACCACTGATCAGCACTTCTTTTAAATACCTTTTCTTTTATTCCTATAAATAAATAACCTATTCGTCGTCTGCCTTTTGGACAGACTATGATAATGCCCGCCCTTGCAGCGAACTTACGTTCGCGCCGGTTCGGAAACAAAGAAATACCTCCTATCACGATGCTACGAGCGCATAAACCCTTATTAGTTACAACATTCACGATTCGACCAAAAAAATACCAGACCGCATACATCTGAGACCACTGCGCGCACCCTTACCCACTAAAAAGCCGCCCCGCCCCGGGCCAACGGCCCGGAACAGAGTGGCTTTACAATGAGTGTTGTAACTAAAATTTTCGAGTCGCTGCAAGTCATGTCGCTGGAAGTCATTCGAACACGCTCGTAAGCGGCCCTAATGGCCCGCTAACGCGGAGATACGCCCCGCCTGCGGCAAAGCCTTGTCGGGACCACTCCGACCGCGTAATGAAGCACCTACGCTACTTTTAGTGGGTTTAGCTTTGCAGGGAGGAGATTGGGATTGGTGAAACCTATCAAACCGGAACCGGCTACGCCGGG
CGTCGTATTTACTGAAAATCCGGTTAGCGCCGGAGGATTTCGCTCGTCTGCCTCCTGTCAGTGCTTGTTATTTGAGCGATGTGACGGCCGCTACATGACCTATCTTCTCTTTCCCGCCCTGAAAATGCCCTCGAATTCTCCCAATATCGTCGCTTGAATGTACTGATTTAGGTTATCCACAGTTAACTGCAAGGGAACTTCCCATAAAGTTACAACCGATATGTTTTTTAAGCGCCAGCCGAACTTGTTTTAAAGTGCGTGGTTTCTTTTAAACCACTGATCAGCACTTCTTTTAAATACCTTTTCTTTTATTCCTATAAATAAATAACCTATTCGTCGTCTGCCTTTTGGACAGACTATGATAATGCCCGCCCTTGCAGCGAACTTACGTTCGCGCCGGTTCGGAAACAAAGAAATACCTCCTATCACGATGCTACGAGCGCATAAACCCTTATTAGTTACAACATTCACGATTCGACCAAAAAAATACCAGACCGCATACATCTGAGACCACTGCGCGCACCCTTACCCACTAAAAAGCCGCCCCGCCCCGGGCCAACGGCCCGGAACAGAGTGGCTTTACAATGAGTGTTGTAACTAAAATTTTCGAGTCGCTGCAAGTCATGTCGCTGGAAGTCATTCGAACACGCTCGTAAGCGGCCCTAATGGCCCGCTAACGCGGAGATACGCCCCGCCTGCGGCAAAGCCTTGTCGGGACCACTCCGACCGCGTAATGAAGCACCTACGCTACTTTTAGTGGGTTTAGCTTTGCAGGGAGGAGATTGGGATTGGTGAAACCTATCAAACCGGAACCGGCTACGCCGGG
AT-rich region
The information of repeat sequences

Motif CADCCGAACTTBYTTTWAAG

StartP-valueSite
2361.07e-11TTTTAAGCGCCAGCCGAACTTGTTTTAAAGTGCGTGGTTT
2132.37e-08CATAAAGTTACAACCGATATGTTTTTTAAGCGCCAGCCGA
1902.37e-08CAGTTAACTGCAAGGGAACTTCCCATAAAGTTACAACCGA
2794.06e-08TTAAACCACTGATCAGCACTTCTTTTAAATACCTTTTCTT
6381.09e-07CGCTGGAAGTCATTCGAACACGCTCGTAAGCGGCCCTAAT

Motif GTCGCTKSAAK

StartP-valueSite
6261.41e-07TGCAAGTCATGTCGCTGGAAGTCATTCGAAC
6116.69e-07AAATTTTCGAGTCGCTGCAAGTCATGTCGCT
1498.81e-07TCCCAATATCGTCGCTTGAATGTACTGATTT

Motif GGARSAGAKTGG

StartP-valueSite
7756.03e-08AGCTTTGCAGGGAGGAGATTGGGATTGGTGAA
5661.35e-07CCAACGGCCCGGAACAGAGTGGCTTTACAATG
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000214 100.0 826 0 0 1 826 1 826 0.0 1526
pORI00000341 99.278 831 1 1 1 826 2162 1332 0.0 1496
pORI00000041 94.196 827 41 4 1 826 1 821 0.0 1254