DoriC

RefSeq

NC_003350

DoriC accession number

pORI00000013

OriC length

456 nt

OriC AT content

0.4649

The location of oriC region

1274..1729 nt

Browse in NCBI

OriC map

OriC sequences

CTAGCGCAGGCGCAGCCGGAGTCTGTCACCCATTCACGGCTGGCCGCCGCCGGCAGGCGACTTTGAGGACCTACAGCCAAGGCAAATTCAGCTGGGGTTAGGAGATCATAAGAAGGACGACTTACCGAGCCTTGTAATTCGCGGGCTCCAGAGCATTACCCCGCTCACAATGTGAACCACCCTCAGATCATGATCCATGAGCGACCATCGCTCACGATCTATGACCTACCCCTAGCTCATCATCTGTGAGCTAGGTTAGCTCACCCTATGAGCTACCCCCCCCTCATGAGCTACCCCTAGCTCATGTGTGAGAGATATCTCACAAGATTTGGAAGATATCGTGCACGGATGAGCTACCCATCGCTCACCAGATGAGCTAGGGTATGGCATGACAGATGAACGATATCGAACAAATTTGCTCGATATCGTTCACGCAACATCACTGTAGGAGGCCCA

AT-rich region

The information of repeat sequences

Motif TATGAVCTACCCHYMGCTCATSAKCT

Start	P-value		Site
220	1.64e-14	GCTCACGATC	TATGACCTACCCCTAGCTCATCATCT	GTGAGCTAGG
267	9.96e-14	TAGCTCACCC	TATGAGCTACCCCCCCCTCATGAGCT	ACCCCTAGCT
348	2.97e-12	ATCGTGCACG	GATGAGCTACCCATCGCTCACCAGAT	GAGCTAGGGT
171	8.33e-12	CCGCTCACAA	TGTGAACCACCCTCAGATCATGATCC	ATGAGCGACC

Motif ATDTGVDMGATATCG

Start	P-value		Site
327	2.68e-09	ATCTCACAAG	ATTTGGAAGATATCG	TGCACGGATG
414	1.63e-08	TATCGAACAA	ATTTGCTCGATATCG	TTCACGCAAC
394	5.43e-08	ATGGCATGAC	AGATGAACGATATCG	AACAAATTTG
306	1.32e-07	CCTAGCTCAT	GTGTGAGAGATATCT	CACAAGATTT

Motif AGCTRGGKT

Start	P-value		Site
375	2.79e-06	TCACCAGATG	AGCTAGGGT	ATGGCATGAC
249	5.22e-06	ATCATCTGTG	AGCTAGGTT	AGCTCACCCT
90	7.81e-06	AGGCAAATTC	AGCTGGGGT	TAGGAGATCA

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000013	100.0	456	0	0	1	456	1	456	0.0	843