DoriC

RefSeq

NC_003134

DoriC accession number

pORI00000345

OriC length

568 nt

OriC AT content

0.5264

The location of oriC region

47552..48119 nt

Browse in NCBI

OriC map

OriC sequences

CCCAATCACTGTAGAGAGTAGAAAGGCTCACTATCCGCTGTAGTGGGCCTTTTGTTTATCTGAAGTCCGCTATCCACTGTAGTGAGTAACAACAACCGAATAGTAACCACTGTAGGCAGTAGCGCTCAAATAACGAAATGAATGTTAGTGGTTACAAACCTAGATGAAACAAGGGCTGCGAGGTTAGTGGTCACTGGGTGACTTGTTAAATCCACTCTCTATAGTGGTTATCGTTGCTCCCTTCGCTATTGGCTATCCACTATGGAGAGCAGAATCGGTTGGCTGGATTTACTATCCACTGTGGAGAGTAGACATCCGCTGAAAACAGTGAAGGTTTACTCTCCATAGTGGATACCCGCTGGAGGTCGCATTCCATCACTCTCCATAGTGGTTGTTTGCTGTGAATGAACGCCTGTTTACTCTCTACAGTGGATAGTGAAGTCGATAATCACCACTTTACTCACTACAGTGGATACCGGATGCCACGGCAGCCGTTTTACTCACTACAGTGGTTATGACCCAGATACGCGCGCGGTGAGCTGGCTACTCACCGCAGTGGTTGGTGTTA

AT-rich region

The information of repeat sequences

Motif TTTACTCWCYACAGTGGATA

Start	P-value		Site
416	1.29e-12	TGAACGCCTG	TTTACTCTCTACAGTGGATA	GTGAAGTCGA
456	3.55e-12	TAATCACCAC	TTTACTCACTACAGTGGATA	CCGGATGCCA
496	2.22e-11	CGGCAGCCGT	TTTACTCACTACAGTGGTTA	TGACCCAGAT
335	2.22e-11	ACAGTGAAGG	TTTACTCTCCATAGTGGATA	CCCGCTGGAG
288	1.01e-10	GTTGGCTGGA	TTTACTATCCACTGTGGAGA	GTAGACATCC

Motif CYATYCACTRTAGWGRGYA

Start	P-value		Site
70	4.25e-12	CTGAAGTCCG	CTATCCACTGTAGTGAGTA	ACAACAACCG
2	9.22e-10	C	CCAATCACTGTAGAGAGTA	GAAAGGCTCA
253	1.25e-09	TCGCTATTGG	CTATCCACTATGGAGAGCA	GAATCGGTTG
31	2.71e-09	GAAAGGCTCA	CTATCCGCTGTAGTGGGCC	TTTTGTTTAT
212	1.07e-08	CTTGTTAAAT	CCACTCTCTATAGTGGTTA	TCGTTGCTCC

Motif AGTGGT

Start	P-value		Site
555	2.85e-04	TACTCACCGC	AGTGGT	TGGTGTTA
387	2.85e-04	CACTCTCCAT	AGTGGT	TGTTTGCTGT
186	2.85e-04	CTGCGAGGTT	AGTGGT	CACTGGGTGA
147	2.85e-04	AATGAATGTT	AGTGGT	TACAAACCTA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000345	100.0	568	0	0	1	568	1	568	0.0	1050