DoriC

RefSeq

NC_003132

DoriC accession number

pORI00000342

OriC length

1036 nt

OriC AT content

0.5396

The location of oriC region

1889..2924 nt

Browse in NCBI

OriC map

OriC sequences

AACGGTGGATCAATATTGGGCCGTTGGTGGAGATATAAGTGGATCACTTTTCATCCGTCGTTGACACCCTGATGAATTCACGTGTTCACGCCTGAATAACAAGAATGCCGGAGATACGCAGTCATATTTTTTACACAATTCTCTAATCCCGACAAGGTCGTAGGTCGTTATAGGAAAATTCTTAGCACCATTCCGGAACAATCAGAACAGCAGGCCATGAACGACTGACAACATTACGAATATAAAAAACGCACCCGGGCCAGACATTCCCCCTACTGATTAAACCAGCCGGACTTGTCCACGGAACGGTCTTTTTAAACCGACACACAGTCTGAGTACAGATACATGTCACGATGATGCAGGATTAGCGGAAGAGTGTGAGCACGTTTCCGGGAACTGTGGTGAACCATAGCTCAATATTCGAGTGAGGGCATACCGGAAACGCGCTCAGATTCGTTGTAACGCGATTTTCCGTACCGGGCAATTTTTTCAGTTGTTTTTTCGTTTCATGTCGTCAGAAACGTTCTGAGCGCGTTTCCGGCATCTGATGCTACGCAAACCATCCCCATGGTCAGTTGACAGCCGGAAACACGCGGGTGTCGTTTTAGCGTATCGACGGGACGGCGTCGAGAAGCACAAAAAACAGATGTTGTACTCAGTCAGTTGTTTTACAGACAGCACTGCGGCAGATTGAAAAAGTACCGTACTTTCAGGAATGTCCAGAAACCATGTGTCAGACTTCGTTCTCCCCCTTCCGGGTGAATTTTTTTGTCATCCGTTCAGGAATCTCTTTATAACGATTACTCCATTTCAGGATTTTTTATGTGGCGTTTACTACAGGCAGGATATTCAAAGGCAAAAAAATCCCCCGGAACAGGCGGAACCCGGACAGGGGGAGAACGAATCGCTAAATAATTTTCGTAGTTGTATTTCCCATCGTTGCTACTGCAACGGGATGAATTTGCCGCAGTTTATCCTGTAAAACAATCCTGATTTACTCACACTCCACATATCACTGACGGAGCACAACGGAATA

AT-rich region

The information of repeat sequences

Motif AGGAANNTTBTKAKCRCGWTTMCKGCA

Start	P-value		Site
517	8.64e-13	TCATGTCGTC	AGAAACGTTCTGAGCGCGTTTCCGGCA	TCTGATGCTA
172	3.52e-12	AGGTCGTTAT	AGGAAAATTCTTAGCACCATTCCGGAA	CAATCAGAAC
369	1.40e-11	GCAGGATTAG	CGGAAGAGTGTGAGCACGTTTCCGGGA	ACTGTGGTGA
782	6.82e-11	TCATCCGTTC	AGGAATCTCTTTATAACGATTACTCCA	TTTCAGGATT
813	4.09e-10	ACTCCATTTC	AGGATTTTTTATGTGGCGTTTACTACA	GGCAGGATAT

Motif CCGGAAACRSGCDG

Start	P-value		Site
583	2.56e-09	CAGTTGACAG	CCGGAAACACGCGG	GTGTCGTTTT
108	2.91e-07	AACAAGAATG	CCGGAGATACGCAG	TCATATTTTT
436	3.21e-07	TGAGGGCATA	CCGGAAACGCGCTC	AGATTCGTTG
868	5.80e-07	AAAAAAATCC	CCCGGAACAGGCGG	AACCCGGACA
885	1.57e-06	CAGGCGGAAC	CCGGACAGGGGGAG	AACGAATCGC

Motif GTGGATSAATTTBCVDCCGTTGNT

Start	P-value		Site
5	1.25e-11	AACG	GTGGATCAATATTGGGCCGTTGGT	GGAGATATAA
39	3.34e-11	GGAGATATAA	GTGGATCACTTTTCATCCGTCGTT	GACACCCTGA
952	2.34e-10	GCTACTGCAA	CGGGATGAATTTGCCGCAGTTTAT	CCTGTAAAAC
921	3.95e-10	AATAATTTTC	GTAGTTGTATTTCCCATCGTTGCT	ACTGCAACGG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000342	100.0	1036	0	0	1	1036	1	1036	0.0	1914