DoriC

RefSeq

NC_002632

DoriC accession number

pORI00000225

OriC length

1465 nt

OriC AT content

0.5986

The location of oriC region

1421..2885 nt

Browse in NCBI

OriC map

OriC sequences

GACTAGTCCTCCCTTCGCATTACAACGAAAAAAAGAATACGGAAACTTAGAACAGCATGAGTATGTGGATTGGTTTTTGTCATTTGCTAAAGTGGTTAATAAGAAACTAAAACCGGATGGAAGTTTTGTTGTAGATTTTGGTGGGGCGTACATGAAAGGCGTTCCAGCAAGAAGTATCTATAACTTTAGAGTTTTGATCAGAATGATAGACGAAGTGGGTTTTTTTCTTGCTGAAGATTTTTATTGGTTTAACCCATCAAAATTACCAAGCCCTATAGAATGGGTTAATAAGAGAAAAATAAGAGTTAAAGATGCAGTGAATACAGTATGGTGGTTCTCTAAAACAGAGTGGCCTAAGTCTGATATAACGAAAGTTCTAGCTCCATATAGCGATAGAATGAAAAAGTTAATTGAAGACCCAGACAAATTCTATACACCAAAAACTAGACCATCTGGGCATGATATAGGGAAGTCGTTCTCTAAAGACAATGGAGGTTCAATTCCTCCTAATTTATTACAAATATCAAACTCAGAATCAAATGGTCAATATTTAGCCAATTGTAAGTTGATGGGTATTAAAGCGCATCCCGCTAGATTCCCTGCTAAGTTACCCGAGTTTTTTATTAGAATGTTAACTGAGCCAGATGATCTTGTTGTTGATATTTTTGGCGGCTCTAATACTACTGGTCTAGTCGCAGAAAGAGAATCTCGTAAATGGATCTCGTTTGAGATGAAACCTGAATATGTTGCGGCATCGGCGTTTCGTTTTTTAGACAATAATATAAGTGAAGAAAAAATAACTGATATTTATAATCGAATCCTTAATGGTGAGTCTTTGGATTTAAACTCTATTATCTAAATTTTAACTCGACCTTTTTGATAAAAAAGTAGTTCCCTGTAGGGCTTAGATCAGGTAGTCTTAGATATGTAAAAAAAAAAACCGCCTCAGCAAAGGCGTTTTCTTAAAGATTGGTTCGTAGAGCAGCAACTCTTTGAACCGAGGTAACAGGTCTGAACACCGCTGAAACCAAATTCTGTTCTATCGAGTTTAGCCGTAATGACGGTGACACTTCAAGGAATTTCAGCAAACAATTCTGCACTCTTGTTACCAATGCTATGCCAGTGCGTTTTTACGTGTCTGTCAGGGTTGGTCANGGATTCAAGAGAACAGTTCACCTGAACAGCGTGATAGTCGGGTAAACGGGAGTCGTGCAAATAGCCCAGCTTGAGCGGAACCACCTAAGCAAGCGCAGTACCGGTACAGGAAGCTGAGACATAGCGCCCCCAAAGCAGAAAGAGCGATTAAAAGCCGGCTGTAAACCTTGTAAGGTGGGAACAGAGAGCGCCACCAGGAGCCGTCAGAGGAAACTTCTGCATCTTTATAGTCCTGTGCAGGTTTCGCCCTATCTTGACTAGAGCACCGAAAATCAGTCGATTTTTGTGAAGGCTCGTCAGGAGGCGGAGC

AT-rich region

The information of repeat sequences

Motif YAGNAAAGKCGTTCYCTNAAR

Start	P-value		Site
465	8.14e-11	GGGCATGATA	TAGGGAAGTCGTTCTCTAAAG	ACAATGGAGG
947	1.48e-09	AAAACCGCCT	CAGCAAAGGCGTTTTCTTAAA	GATTGGTTCG
151	3.98e-09	GTGGGGCGTA	CATGAAAGGCGTTCCAGCAAG	AAGTATCTAT
324	7.94e-09	GCAGTGAATA	CAGTATGGTGGTTCTCTAAAA	CAGAGTGGCC
881	2.05e-08	ACCTTTTTGA	TAAAAAAGTAGTTCCCTGTAG	GGCTTAGATC

Motif AGCGCMHCC

Start	P-value		Site
1342	8.93e-07	GGGAACAGAG	AGCGCCACC	AGGAGCCGTC
1278	1.39e-06	GCTGAGACAT	AGCGCCCCC	AAAGCAGAAA
580	6.08e-06	TGGGTATTAA	AGCGCATCC	CGCTAGATTC
1229	9.82e-06	GCCCAGCTTG	AGCGGAACC	ACCTAAGCAA

Motif YTTGYTGWWGATWTTKDTKGS

Start	P-value		Site
125	3.53e-11	GGATGGAAGT	TTTGTTGTAGATTTTGGTGGG	GCGTACATGA
650	7.84e-11	GCCAGATGAT	CTTGTTGTTGATATTTTTGGC	GGCTCTAATA
227	1.04e-10	GGGTTTTTTT	CTTGCTGAAGATTTTTATTGG	TTTAACCCAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000225	100.0	1465	0	0	1	1465	1	1465	0.0	2702