DoriC

RefSeq

NC_002575

DoriC accession number

pORI00000131

OriC length

594 nt

OriC AT content

0.5051

The location of oriC region

26125..26718 nt

Browse in NCBI

OriC map

OriC sequences

TTGAAGAACCTGGAGTTGCGGATTTTCTCAATGTCGAATTCACTTGAGCTTTGTTGGCTTGGAAGTGGAGAATATAAGGGTTGTTTGAGCAAGAGGCCCCGCATGCCAGCTTTGCTGAAATTTAAAAATGCAAAAAAGAGGGCCCCGCAATGCTCTAAATTATTCAGCCGACAACGTGCAATTTGCCAATTTACCTAACGAGCCACCTGCCTTCAGACCTACTGTTTGCTGCGCTGGAAGGGAAGTAGGTACGACGTCCCTATTAACGAATAGGTTTGACAGGATATATTCTAAAGTAATGTGCCTTCGTGCCTTCGTGCCTTCGTGCCTTCGTGCCTTCGTGCCTTCGTGCCTTCGTGCCTTCGTGCCTTCGTGCCCTCGTGCCCTCGTGCCTTCGTCTGTTTATAGCTTGCTTGATGTCAACCCTGGCTCGTGAACTCGTGAATGGGTTCCCTGGATTCTTCAAAAATTTAATTGTCCCAACTGAGTCTATATACGCTGTGTAACGCACCCACGTCACACGGAGCTATGCCCATTCTGCTAGTAAGGCCCATCGTGCCGTCATCATGCTCTCCGTCGTCACGTCTTGCCGCC

AT-rich region

The information of repeat sequences

Motif GCCTTCGTGCCTTCG

Start	P-value		Site
351	2.11e-09	GTGCCTTCGT	GCCTTCGTGCCTTCG	TGCCTTCGTG
335	2.11e-09	GTGCCTTCGT	GCCTTCGTGCCTTCG	TGCCTTCGTG
319	2.11e-09	GTGCCTTCGT	GCCTTCGTGCCTTCG	TGCCTTCGTG
303	2.11e-09	AAAGTAATGT	GCCTTCGTGCCTTCG	TGCCTTCGTG
383	3.99e-09	GTGCCCTCGT	GCCCTCGTGCCTTCG	TCTGTTTATA

Motif CCNGCWWTNYTCHAAWTTA

Start	P-value		Site
144	1.81e-10	AAAAGAGGGC	CCCGCAATGCTCTAAATTA	TTCAGCCGAC
106	4.54e-08	GCCCCGCATG	CCAGCTTTGCTGAAATTTA	AAAATGCAAA
175	8.68e-08	CAGCCGACAA	CGTGCAATTTGCCAATTTA	CCTAACGAGC
280	1.00e-07	ATAGGTTTGA	CAGGATATATTCTAAAGTA	ATGTGCCTTC
453	1.15e-07	GAATGGGTTC	CCTGGATTCTTCAAAAATT	TAATTGTCCC

Motif TGGAAGKGRAGWAKRTAMG

Start	P-value		Site
60	2.77e-11	TTTGTTGGCT	TGGAAGTGGAGAATATAAG	GGTTGTTTGA
235	4.03e-11	TTTGCTGCGC	TGGAAGGGAAGTAGGTACG	ACGTCCCTAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000131	100.0	594	0	0	1	594	1	594	0.0	1098