DoriC

RefSeq

NC_002144

DoriC accession number

pORI00000023

OriC length

569 nt

OriC AT content

0.6204

The location of oriC region

5733..382 nt

Browse in NCBI

OriC map

OriC sequences

AATGAACACCCACAAAACATGAACTATAAAAATAATAGTTCACGCAACTTAATAATGCAATGTTTTTTTTTATGTTCATGCTTTTTTGTGGATTTCACCGTAAAAGCGTTCATGTTTTACCGTAAAAATGTTCATGCTTTACCGTAAAAGTGTTCATGCTTTACCGTAAAAGTGTTCATGCTTCATGATTTAACTATATGATTCTAAATGGTTTTTATGCGACTAAAACAAGATTTAAAAACAAAAAAACATATAAAACAAAATGAGTGCCTGTGGATAAGCTTAAAAAAACTGTCAGATCCATCACAAAAAAATTAATTACAGTGAGTAAGAGGCATTCTGTAAGTCTCGCTTCACTTCCGCTTCCTCGCTTTTGCTGTTCGTTCCTCGTCGCTTTGCTCCTGCGGTACGCCTCAGCAAAAGACTGCGGCGAGCGGTAGGATCTCTTTCTCACGTGCTTTTTGTTGTGCCTAAGCGTCACAGGAAGCTCTCTACGCCGTTTAAATTAGTTTTATTGCATTTGGGTAGGGTGAATATGATGGGCGCTCAAAAGGCGCTCTCAGCTCGTT

AT-rich region

The information of repeat sequences

Motif ACCGTAAAAGTGTTCATGCTT

Start	P-value		Site
163	4.28e-13	TTCATGCTTT	ACCGTAAAAGTGTTCATGCTT	CATGATTTAA
141	4.28e-13	TTCATGCTTT	ACCGTAAAAGTGTTCATGCTT	TACCGTAAAA
119	1.37e-12	TTCATGTTTT	ACCGTAAAAATGTTCATGCTT	TACCGTAAAA
97	2.91e-12	TGTGGATTTC	ACCGTAAAAGCGTTCATGTTT	TACCGTAAAA

Motif AAAACA

Start	P-value		Site
255	4.36e-04	AAAAACATAT	AAAACA	AAATGAGTGC
246	4.36e-04	TAAAAACAAA	AAAACA	TATAAAACAA
238	4.36e-04	ACAAGATTTA	AAAACA	AAAAAACATA
225	4.36e-04	TTATGCGACT	AAAACA	AGATTTAAAA
14	4.36e-04	GAACACCCAC	AAAACA	TGAACTATAA

Motif GSSKMDCRRDARGMKCTCT

Start	P-value		Site
542	1.23e-10	GAATATGATG	GGCGCTCAAAAGGCGCTCT	CAGCTCGTT
429	3.29e-10	AAAAGACTGC	GGCGAGCGGTAGGATCTCT	TTCTCACGTG
475	1.46e-09	TTGTGCCTAA	GCGTCACAGGAAGCTCTCT	ACGCCGTTTA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000023	100.0	569	0	0	1	569	1	569	0.0	1051