DoriC

RefSeq

NC_002097

DoriC accession number

pORI00000361

OriC length

1269 nt

OriC AT content

0.6738

The location of oriC region

1479..2747 nt

Browse in NCBI

OriC map

OriC sequences

ATTATTTCCCGGGAAATAATGTTCCATAATCTGCGGGATCTTGGCGCCCTGGGAAGGTCTTCCTCTGGATGCAGACCTTGAGGTCCTGGTCCTGGGGGAAAGTCCTGGTTCTTGCCTGCAGCTGCAAGGAAGAATTTCTCCCTGGGAAAGTATGCCCTGGAAGAAAGTCCTGGTTCTTGCCTGCAACTGCAAGGAAGAATTTCTCCCTGGGAAAGGTTGCCCTGGATAATAAAAAACACAAAAAATAAGAGGTGAGTATAAAATTATTTAAGTAATCTTTTTACGGTAACGGTTGACATATGTGTATTTTTATGTATGGTTTATGTATGGTTTGTGTAAGGTTATTCGATGTTGATTTTTACTCTATGGAATGTTATAGAAATGTTATGGTTTTGTTTTTTTGATTTGTTACTGATTTATTCCGTTTTCTTTTTCAATGTCGGTTGACATATGTACACCCATGTATTTTATTTGAACATGTTTTGTGTATGGTCGATTGATATTGATTTTACGAAGATTAAATGTTATAGTTTTGTTTTTTTGATTTGTTACTGATTTATTCCGTTTTCTTTTTCGGTATCGGATGACATTTCTATAACTTACTAGTTTTGATGTAGTTTCTTACTACAATGTCATTTGATAGTGATTTTTTTGTTCGAAAAAAATGAAGTTTGTTTTTGATATACTGTCTCACCCGATATTGATTTACAAATAGCAAAAATACTAATCCGCTTGATGTTGATTTCTTCATATATCATATGAATATTGCCAAAATAAAAGATGATTTGTTATTATCAAATCGTTGTCGGCTTCCTTTTCGTCTTACTTTGATTATAAGTCTCCGGGTTTGCCGTCGCGGGCCGTTTTTCTTTTTTATTTTTGCTATTCTTTTTCTTCCTTGGGCTTTCTATATCTCTAAAACTATTTATAGCAGATGAATTTATAAAGTTTAAAGCTTATTTCATTTTAGAGCATTCAGGTCTGAATGTTCTGAGGTACGTATGTTATATATGTTATGTGTAACATATATAGAATATCAACGCCTGCCTTGATGGAACCTGAAGACTCGACACCTTCTTTTAATAAGGTAGGCGTTAATCTTATTCTTATAATTTTTTTCTATTGTTTGTGAATATTTCTTCTATGAAAATGTTTTTATGTTTTGTGGTACATTTTTGTAATGTCGAGTTACAAAAAATATAGGTTCTGTAATATTATGAAAATTGTTATCTTTGGTTTACGGTTTAAATTTTCGACAGGAAATGTTCT

AT-rich region

The information of repeat sequences

Motif CTKSNCCTGSARGRAAGWHYTKSTYCYTG

Start	P-value		Site
116	5.28e-15	TGGTTCTTGC	CTGCAGCTGCAAGGAAGAATTTCTCCCTG	GGAAAGTATG
181	9.17e-15	TGGTTCTTGC	CTGCAACTGCAAGGAAGAATTTCTCCCTG	GGAAAGGTTG
86	1.06e-13	CCTTGAGGTC	CTGGTCCTGGGGGAAAGTCCTGGTTCTTG	CCTGCAGCTG
151	1.59e-12	CCTGGGAAAG	TATGCCCTGGAAGAAAGTCCTGGTTCTTG	CCTGCAACTG
40	7.23e-12	TCTGCGGGAT	CTTGGCGCCCTGGGAAGGTCTTCCTCTGG	ATGCAGACCT

Motif TACWGWTWTWTWMCGTHTYCTTTTWYGGTRTCGGWTGAC

Start	P-value		Site
550	5.04e-18	TTTGATTTGT	TACTGATTTATTCCGTTTTCTTTTTCGGTATCGGATGAC	ATTTCTATAA
410	3.75e-15	TTTGATTTGT	TACTGATTTATTCCGTTTTCTTTTTCAATGTCGGTTGAC	ATATGTACAC
1028	5.04e-13	GTGTAACATA	TATAGAATATCAACGCCTGCCTTGATGGAACCTGAAGAC	TCGACACCTT
824	2.09e-12	CTTTTCGTCT	TACTTTGATTATAAGTCTCCGGGTTTGCCGTCGCGGGCC	GTTTTTCTTT
259	4.43e-12	GAGGTGAGTA	TAAAATTATTTAAGTAATCTTTTTACGGTAACGGTTGAC	ATATGTGTAT

Motif VTRYWADGTCRHTYGATRTTGATTT

Start	P-value		Site
625	3.47e-11	TAGTTTCTTA	CTACAATGTCATTTGATAGTGATTT	TTTTGTTCGA
683	6.11e-11	TGTTTTTGAT	ATACTGTCTCACCCGATATTGATTT	ACAAATAGCA
721	3.15e-10	AATAGCAAAA	ATACTAATCCGCTTGATGTTGATTT	CTTCATATAT
485	3.40e-10	AACATGTTTT	GTGTATGGTCGATTGATATTGATTT	TACGAAGATT
334	3.69e-10	TGTATGGTTT	GTGTAAGGTTATTCGATGTTGATTT	TTACTCTATG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000361	100.0	1269	0	1	1269	1	1269	0.0	2344
pORI00000361	92.958	71	5	156	226	91	161	4.35e-23	104
pORI00000361	92.958	71	5	91	161	156	226	4.35e-23	104