DoriC

RefSeq

NC_002059

DoriC accession number

pORI00000359

OriC length

717 nt

OriC AT content

0.6304

The location of oriC region

2536..448 nt

Browse in NCBI

OriC map

OriC sequences

TTTAATATACCTCCGTTATGAAAATGATTAACACAAATTAAATATGGTAAAAAAAATAAAAAACTAATAAAAAACGATAAAATGTTCTAACAAGACTATAACAAATTATAATACAGATTACAACATTTGTTATAATTTAATTAGAACATTTGTAGTTAAAAATTAGAACAAATGTAATTAAAAATTAGAACAAGCAAAATCCCGATAAAGCCCGTAAAATCAACAAAAACAGCTAAAAAAATAAAAAATCACTCTTATCTATAATGGGGTCTGGGGAATACAACGGAAGACTTTCTCCTGTTTAACATACAAACACTGCGTACGCACGCAGTGTGAATATATTGAACAAGGAGAAGGGTTAAGGGTGAAAGCCTGTAGTTGTAGGCACAGACGCAAGTTCAAGCGAAGGTTGGTAGTTGGTTCAGGCGGTCAGCCTGATCCAAATATCAAACTGAGGTTGAACCCCCAAAGGCTTCGCAGAAGACTTTGGAGCTGTCGGCAGACCCCTCGGAGAGCGAGCGGGCTTTACGGAGTAAAGTCTAGTGAGTTAGACTTTCACTTGAAAGTTTTCCGAAACGATGGTATATTACAAGTGAGAGGAAGTTCTGTTCAATGCGATAGCCATTGATCAGGAACGACCTCGAAACGAAGTAATAAACCAGAGTAAGGAAGACCGAAAGGGAAAGGCTTACTCACTAGAAGCGAAGAGGTATACTT

AT-rich region

The information of repeat sequences

Motif GGARDWNNGTTCAGDGDGWNAGCCTK

Start	P-value		Site
412	1.22e-11	AGCGAAGGTT	GGTAGTTGGTTCAGGCGGTCAGCCTG	ATCCAAATAT
350	1.71e-10	TATTGAACAA	GGAGAAGGGTTAAGGGTGAAAGCCTG	TAGTTGTAGG
600	8.96e-10	CAAGTGAGAG	GAAGTTCTGTTCAATGCGATAGCCAT	TGATCAGGAA
530	2.19e-09	CGGGCTTTAC	GGAGTAAAGTCTAGTGAGTTAGACTT	TCACTTGAAA
498	4.80e-09	TGGAGCTGTC	GGCAGACCCCTCGGAGAGCGAGCGGG	CTTTACGGAG

Motif ATTAGAACAWDTGWAAT

Start	P-value		Site
162	3.90e-09	GTAGTTAAAA	ATTAGAACAAATGTAAT	TAAAAATTAG
140	4.75e-09	TTATAATTTA	ATTAGAACATTTGTAGT	TAAAAATTAG
117	3.30e-08	TATAATACAG	ATTACAACATTTGTTAT	AATTTAATTA
184	4.36e-07	GTAATTAAAA	ATTAGAACAAGCAAAAT	CCCGATAAAG
27	6.29e-07	TATGAAAATG	ATTAACACAAATTAAAT	ATGGTAAAAA

Motif GTTKWASVYACARASRC

Start	P-value		Site
457	4.80e-10	TCAAACTGAG	GTTGAACCCCCAAAGGC	TTCGCAGAAG
378	2.17e-09	AAAGCCTGTA	GTTGTAGGCACAGACGC	AAGTTCAAGC
300	2.92e-08	ACTTTCTCCT	GTTTAACATACAAACAC	TGCGTACGCA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
pORI00000359	100.0	717	0	0	1	717	1	717	0.0	1325