RefSeq NC_001787
DoriC accession number pORI00000253
OriC length 250 nt
OriC AT content 0.444
The location of oriC region 2410..220 nt
Browse in NCBI
OriC map
OriC sequences
CCACAGCGTCACCTGACCACCCTTTTCGTTAACAAGGGTTGTTCGCGGGGACAAAACTAGCCCCAAGCTCGCGTTTCCGCGAACAATCCGCGTTAGTACCTTGACGCGGCTTTACCCAGCGCGCCTACGCGCCGAGATTTCGCAGTTCCTGCATACTTTAACCAGACAGTTTTAACACTACGAGACAAGAAAGCGCCCCCGGCAGTCCGGCAAGACTCCGAGGGCAACTGGAAGATTGGTCCTTCCTCTA
CCACAGCGTCACCTGACCACCCTTTTCGTTAACAAGGGTTGTTCGCGGGGACAAAACTAGCCCCAAGCTCGCGTTTCCGCGAACAATCCGCGTTAGTACCTTGACGCGGCTTTACCCAGCGCGCCTACGCGCCGAGATTTCGCAGTTCCTGCATACTTTAACCAGACAGTTTTAACACTACGAGACAAGAAAGCGCCCCCGGCAGTCCGGCAAGACTCCGAGGGCAACTGGAAGATTGGTCCTTCCTCTA
AT-rich region
The information of repeat sequences

Motif STDYSCGVSRASAAWNCG

StartP-valueSite
733.09e-08CCAAGCTCGCGTTTCCGCGAACAATCCGCGTTAGTACC
1256.11e-08CCCAGCGCGCCTACGCGCCGAGATTTCGCAGTTCCTGC
1781.66e-07AGTTTTAACACTACGAGACAAGAAAGCGCCCCCGGCAG
413.31e-07AACAAGGGTTGTTCGCGGGGACAAAACTAGCCCCAAGC
2037.07e-07GCGCCCCCGGCAGTCCGGCAAGACTCCGAGGGCAACTG

Motif CKTTAMCMAG

StartP-valueSite
1569.38e-07TTCCTGCATACTTTAACCAGACAGTTTTAA
1103.95e-06CTTGACGCGGCTTTACCCAGCGCGCCTACG
274.71e-06CCACCCTTTTCGTTAACAAGGGTTGTTCGC

Motif GWTWGKWCCTT

StartP-valueSite
2341.28e-06GCAACTGGAAGATTGGTCCTTCCTCTA
921.28e-06AACAATCCGCGTTAGTACCTTGACGCGGCTT
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
pORI00000253 100.0 250 0 0 1 250 1 250 0.0 462