RefSeq NC_015848.1
Accession number NC_015848.1
DoriC accession number ORI94040331
OriC length 527 nt
OriC AT content 0.426945
The location of oriC region 1525..2051 nt
Browse in NCBI
OriC map
OriC sequences
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaaCACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnan
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
dnaACACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGTCACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCATACAGTCCCGGCGGTTCCGTTCACAACCCACGCCTCATCCCCACCGGCCCAACACACACCCCACAGTCATCGCCACCGTCATCCACAACTCCGACCGACGTCGACCTGCACCAAGACCAGACTGTCCCCAAACTGCACACCCTCTAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGTTCGCTGCATACCACCCGCATAACTGGCTCGTCGCGGTGGGTCAGAGGTCAATGATGAACTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTGGCGGTTCACGCGTCATGGGCGTTCGTGGTTGGCAGTCCCCACGCTAGCGGGGCGCTAGCCACGGCATCGAACTCATCGTGAGGTGAAAGGGCGCAdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif ACVGHGAKTDSYTCBDMGDDTGTTBTTVVAMARACNKCGC

StartP-valueSite
2651.25e-18TAATACTGTTACCGACATTTCTTCGTCGTTTGTTCTTGGAAAGACAGCGCTGGGGATCGT
23.17e-14CACGGCGTGTTCTTCCGACAACGTTCTTAAAAAAACTTCTCTCTCCCAGGT
624.47e-14CACACCAGTCACAGAGATTGGCTGTGAGTGTCGCTGTGCACAAACCGCGCACAGACTCAT
3831.34e-13CTTTCAAGTTGACGTGAGAAGCTCTACGGTTGTTGTTCGACTGCCGTTGCGGCCGTCGTG

Motif GTCVYGGBGGTTC

StartP-valueSite
4271.68e-08CGTTGCGGCCGTCGTGGCGGTTCACGCGTCATG
1153.32e-07GACTCATACAGTCCCGGCGGTTCCGTTCACAAC
3445.44e-07TAACTGGCTCGTCGCGGTGGGTCAGAGGTCAAT
4447.15e-07CGGTTCACGCGTCATGGGCGTTCGTGGTTGGCA

Motif TCATCSHCA

StartP-valueSite
1775.85e-06CACCCCACAGTCATCGCCACCGTCATCCA
1452.13e-05AACCCACGCCTCATCCCCACCGGCCCAAC
1893.14e-05ATCGCCACCGTCATCCACAACTCCGACCG
5054.16e-05GGCATCGAACTCATCGTGAGGTGAAAGGG
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI94040331 100.0 527 0 0 1 527 1 527 0.0 974
ORI96040577 98.672 527 7 0 1 527 1 527 0.0 935
ORI95011030 98.672 527 7 0 1 527 1 527 0.0 935
ORI96040557 98.672 527 7 0 1 527 1 527 0.0 935
ORI95010993 98.672 527 7 0 1 527 1 527 0.0 935
ORI92710500 98.672 527 7 0 1 527 1 527 0.0 935
ORI10040012 98.672 527 7 0 1 527 1 527 0.0 935
ORI10040009 98.672 527 7 0 1 527 1 527 0.0 935
ORI96040590 98.482 527 8 0 1 527 1 527 0.0 929
ORI96010625 98.482 527 8 0 1 527 1 527 0.0 929
ORI94040329 98.485 528 7 1 1 527 1 528 0.0 929
ORI92040109 98.482 527 8 0 1 527 1 527 0.0 929
ORI90040107 98.482 527 8 0 1 527 1 527 0.0 929
ORI10040003 98.482 527 8 0 1 527 1 527 0.0 929
ORI96040588 98.292 527 9 0 1 527 1 527 0.0 924
ORI95040360 98.292 527 9 0 1 527 1 527 0.0 924
ORI93040201 98.292 527 9 0 1 527 1 527 0.0 924