DoriC

RefSeq

NZ_AP017569.1

DoriC accession number

aORI10010272

OriC length

726 nt

OriC AT content

0.5909

The location of oriC region

3135..3860 nt

Browse in NCBI

OriC map

OriC sequences

GTCGGTCACAAAGCCAGAGCGCGATGCCGTGAAGACCGGGTGCGGGGAGAATCACGTGTGGGGATGGGTTCGATTCGGGGGCGAAACGAGTAGTGAACGATACGAGCGGAGAGACACACCGTGTTTCCGGTGAAATCGGGGTCTGGCTGGGTGCGGTTGTTGGGTGGGCTGGGTATCTTGTCCGAGAAACCGAACATCCTGTCCGATTCAAAACAACAGGTTTTATTACCTAATCCAGAGTAAAGCTCGCCAAGCCACATTGGCGAAGGCTCGCCGAGCCATACAGCCCGTTTCATCGGAAACGTGGTCTCCCTCGTGATGGAGTCGTCTAACACTCCATCGAACACCGGGTTTCCGGTGAAATAGGCTGGCAATCGCCTCCCCGTTGTTGGTCTTGTGGCACACTCGTCTCACTCCTGTCGCACTCTCGCTGATCGGTGCCTATTCTCGTCGTCCGTTCTCTCTGTCGTTCTTATCGCGTCGACCTCGCTCCTCCGAGGGTCTCGCCCCGACCTACCCCAAATCACCTCAACCCGTTCCTCCCCGACCTACCCCAAACCACCTCAACCCGTTCCTCCCCGACCTACCTCTCCCCAATCCCCGCTTTCACCGGAAACACGGTGTGTGTCTCGACCGACCAACCCGTCCCCCGACCTCCCCCACGACCGCGCCCCACACCCGGCCACGAAACAGAACGCATTTCACCGGAAACCCGGTGTCTCTCTC

ORB AT-rich region

The information of repeat sequences

Motif ACACCSBGTTTCMBSKGAAAYVBGGT

Start	P-value		Site
344	1.86e-12	ACTCCATCGA	ACACCGGGTTTCCGGTGAAATAGGCT	GGCAATCGCC
283	4.94e-12	GCCGAGCCAT	ACAGCCCGTTTCATCGGAAACGTGGT	CTCCCTCGTG
692	5.44e-12	GCCACGAAAC	AGAACGCATTTCACCGGAAACCCGGT	GTCTCTCTC
116	5.98e-12	GCGGAGAGAC	ACACCGTGTTTCCGGTGAAATCGGGG	TCTGGCTGGG
597	2.55e-11	CCTCTCCCCA	ATCCCCGCTTTCACCGGAAACACGGT	GTGTGTCTCG

Motif CCCCGACCTACCCCA

Start	P-value		Site
542	8.80e-09	ACCCGTTCCT	CCCCGACCTACCCCA	AACCACCTCA
507	8.80e-09	GAGGGTCTCG	CCCCGACCTACCCCA	AATCACCTCA
648	3.90e-08	CCAACCCGTC	CCCCGACCTCCCCCA	CGACCGCGCC
577	4.49e-08	ACCCGTTCCT	CCCCGACCTACCTCT	CCCCAATCCC

Motif WAYYACCTMAWCCMG

Start	P-value		Site
522	1.81e-09	ACCTACCCCA	AATCACCTCAACCCG	TTCCTCCCCG
557	2.51e-08	ACCTACCCCA	AACCACCTCAACCCG	TTCCTCCCCG
224	4.94e-08	CAACAGGTTT	TATTACCTAATCCAG	AGTAAAGCTC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010272	100.0	726	0	0	1	726	1	726	0.0	1341
aORI10010147	94.286	35	2	0	686	720	41	7	7.31e-09	55